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Moc05g27100 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g27100
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:19541317..19543544
RNA-Seq ExpressionMoc05g27100
SyntenyMoc05g27100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS34966.1 hypothetical protein Acr_00g0037010 [Actinidia rufa]4.2e-1431.72Show/hide
Query:  EWEIRQIPRSENRNVDALAQLASAYITEEAREIPMKFVAEPNIR----KPKNLPVMTVPQLSTWTDPLVKHLTTEESPEK--------------------
        E++I QIPR +N+  DALA LAS +          +F+++ N++    + K+     +P +  W       + T E+P                      
Subjt:  EWEIRQIPRSENRNVDALAQLASAYITEEAREIPMKFVAEPNIR----KPKNLPVMTVPQLSTWTDPLVKHLTTEESPEK--------------------

Query:  -NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKLA
         N++   +E  LR+ LDLL+E +E A+    A K   A++YN R++ R+F  GD+VL +V  + ++P+ G LGPTWEGPY V K++
Subjt:  -NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKLA

GFZ15730.1 hypothetical protein Acr_25g0001390 [Actinidia rufa]7.1e-1430.23Show/hide
Query:  LLTTHRVKFGSPEWEIRQIPRSENRNVDALAQLASAYITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVKHLTTE-----------------
        LLT  RV       +I Q+ R  N +VDALA LAS + +E  R I +  +  P++  P+ L ++     S+W +P++  +  +                 
Subjt:  LLTTHRVKFGSPEWEIRQIPRSENRNVDALAQLASAYITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVKHLTTE-----------------

Query:  ----------ESPEKNYDP---------------DTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGV
                  E  + N++P               + +EE L   LDL++E +E    RM   ++   + YN ++Q R F V D+VL KV+ N KNP DG 
Subjt:  ----------ESPEKNYDP---------------DTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGV

Query:  LGPTWEGPYVVTKLA
        LGP WEG   + KLA
Subjt:  LGPTWEGPYVVTKLA

GFZ18368.1 hypothetical protein Acr_27g0001070 [Actinidia rufa]4.9e-1536.72Show/hide
Query:  SPEWEIRQIPRSENRNVDALAQLASA--YITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVKHLTTEESPE------------KNYDPDTSE
        SPE E+  + R  NR V   ++   A  +   E R IP++F+A P+I +  NL V+ V +  TW D ++ +L     P              N+D +++E
Subjt:  SPEWEIRQIPRSENRNVDALAQLASA--YITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVKHLTTEESPE------------KNYDPDTSE

Query:  ESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKLA
          LR+ LDLL+E +E A+ R  A K   A++YN R++ R+F  GD+VL KV  + K P+ G L  TWEGPY V K++
Subjt:  ESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKLA

XP_034208229.1 uncharacterized protein LOC117621790 [Prunus dulcis]2.4e-1445.78Show/hide
Query:  YDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKL
        YD   ++E L + LD ++EL++ +  R +A K+C A++Y++R++PRAF++GD V+ KV    KNP +G LGPTWEGPY + K+
Subjt:  YDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKL

XP_034213078.1 uncharacterized protein LOC117625661 [Prunus dulcis]1.6e-1345.78Show/hide
Query:  YDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKL
        YD  T++E L + LD ++EL++ +  R +A K+  A++Y++R++PRAF++GD V+ KV    KNP +G LGPTWEGPY + K+
Subjt:  YDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKL

TrEMBL top hitse value%identityAlignment
A0A2N9H2V5 RNase H domain-containing protein2.8e-1635.48Show/hide
Query:  IPRSENRNVDALAQLASAYITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVK-HLTTEESPEKNYDPDTSEESLRMKLDLLEELQEGAKQRM
        IPR +N   D LA+LAS+ + ++  EI  +   +      KN       +++  ++ +V   +  +      YD   +EE L + LDL++E++E  + RM
Subjt:  IPRSENRNVDALAQLASAYITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVK-HLTTEESPEKNYDPDTSEESLRMKLDLLEELQEGAKQRM

Query:  IACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKL
           +E  A+HYNT+++PR F  GD+VL KV    K+PT G LGP WEGPY V ++
Subjt:  IACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKL

A0A7J0H5S4 Uncharacterized protein2.4e-1536.72Show/hide
Query:  SPEWEIRQIPRSENRNVDALAQLASA--YITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVKHLTTEESPE------------KNYDPDTSE
        SPE E+  + R  NR V   ++   A  +   E R IP++F+A P+I +  NL V+ V +  TW D ++ +L     P              N+D +++E
Subjt:  SPEWEIRQIPRSENRNVDALAQLASA--YITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVKHLTTEESPE------------KNYDPDTSE

Query:  ESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKLA
          LR+ LDLL+E +E A+ R  A K   A++YN R++ R+F  GD+VL KV  + K P+ G L  TWEGPY V K++
Subjt:  ESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKLA

A0A7N2LNH8 Ribonuclease H5.3e-1550Show/hide
Query:  NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVT
        N+D   ++ES+R++LDL++E++  A+QR+   +E  A+HYN+R++ R FQVGD+VL +V+  A++PT G LGP WEGPY VT
Subjt:  NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVT

A0A7N2MG20 Ribonuclease H5.3e-1550Show/hide
Query:  NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVT
        N+D   ++ES+R++LDL++E++  A+QR+   +E  A+HYN+R++ R FQVGD+VL +V+  A++PT G LGP WEGPY VT
Subjt:  NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVT

A0A7N2N013 Ribonuclease H5.3e-1550Show/hide
Query:  NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVT
        N+D   ++ES+R++LDL++E++  A+QR+   +E  A+HYN+R++ R FQVGD+VL +V+  A++PT G LGP WEGPY VT
Subjt:  NYDPDTSEESLRMKLDLLEELQEGAKQRMIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCGAACGCACCTCAATTGGCCACGGTGCCCCTTCTCAATGCAAGACACACAATACTTCTCCGCGCCAAGCGGGCACACCCCAATTGGCCGTAGTGCCCTTTCT
CAACGCAAGGAGCACGACCTCTGCACAATCCTTCTCTGCGAAAAGCAAATGTGACTCAAGCGGCCGCGGTGCACCTTCTCCCTTGTGGTCACTACAGCCATCTTTCCTAG
AGCATGAAGCGCACGCAACCATGGTGGCTACTACTTTACACACCTTCGTGCCATACCTAGTGTGCTGTTCGAGTCAAGAATTCGTCTTTCCTCTATTAACAACCCATCGG
GTCAAATTCGGATCACCCGAATGGGAAATTCGGCAAATACCACGATCGGAGAACAGAAATGTTGACGCACTGGCACAACTAGCCTCTGCCTACATAACGGAAGAAGCACG
GGAAATTCCCATGAAGTTCGTTGCAGAACCAAACATAAGAAAGCCCAAAAACCTCCCCGTGATGACCGTCCCTCAATTAAGTACTTGGACGGATCCCTTGGTGAAACACC
TGACAACAGAAGAGTCGCCCGAAAAAAATTATGATCCCGATACTAGTGAAGAATCTTTAAGAATGAAGTTAGATCTGTTAGAAGAGTTACAAGAAGGTGCTAAACAACGA
ATGATAGCATGCAAGGAATGCAGTGCGCAACATTATAACACTCGTATGCAACCACGAGCGTTTCAAGTAGGAGATATCGTTCTATTCAAAGTACTCCCTAACGCCAAGAA
CCCAACAGACGGTGTCCTTGGTCCTACATGGGAAGGCCCATATGTGGTCACTAAACTAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCGAACGCACCTCAATTGGCCACGGTGCCCCTTCTCAATGCAAGACACACAATACTTCTCCGCGCCAAGCGGGCACACCCCAATTGGCCGTAGTGCCCTTTCT
CAACGCAAGGAGCACGACCTCTGCACAATCCTTCTCTGCGAAAAGCAAATGTGACTCAAGCGGCCGCGGTGCACCTTCTCCCTTGTGGTCACTACAGCCATCTTTCCTAG
AGCATGAAGCGCACGCAACCATGGTGGCTACTACTTTACACACCTTCGTGCCATACCTAGTGTGCTGTTCGAGTCAAGAATTCGTCTTTCCTCTATTAACAACCCATCGG
GTCAAATTCGGATCACCCGAATGGGAAATTCGGCAAATACCACGATCGGAGAACAGAAATGTTGACGCACTGGCACAACTAGCCTCTGCCTACATAACGGAAGAAGCACG
GGAAATTCCCATGAAGTTCGTTGCAGAACCAAACATAAGAAAGCCCAAAAACCTCCCCGTGATGACCGTCCCTCAATTAAGTACTTGGACGGATCCCTTGGTGAAACACC
TGACAACAGAAGAGTCGCCCGAAAAAAATTATGATCCCGATACTAGTGAAGAATCTTTAAGAATGAAGTTAGATCTGTTAGAAGAGTTACAAGAAGGTGCTAAACAACGA
ATGATAGCATGCAAGGAATGCAGTGCGCAACATTATAACACTCGTATGCAACCACGAGCGTTTCAAGTAGGAGATATCGTTCTATTCAAAGTACTCCCTAACGCCAAGAA
CCCAACAGACGGTGTCCTTGGTCCTACATGGGAAGGCCCATATGTGGTCACTAAACTAGCTTGA
Protein sequenceShow/hide protein sequence
MSSERTSIGHGAPSQCKTHNTSPRQAGTPQLAVVPFLNARSTTSAQSFSAKSKCDSSGRGAPSPLWSLQPSFLEHEAHATMVATTLHTFVPYLVCCSSQEFVFPLLTTHR
VKFGSPEWEIRQIPRSENRNVDALAQLASAYITEEAREIPMKFVAEPNIRKPKNLPVMTVPQLSTWTDPLVKHLTTEESPEKNYDPDTSEESLRMKLDLLEELQEGAKQR
MIACKECSAQHYNTRMQPRAFQVGDIVLFKVLPNAKNPTDGVLGPTWEGPYVVTKLA