; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc05g28200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g28200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr5:20708370..20708861
RNA-Seq ExpressionMoc05g28200
SyntenyMoc05g28200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038880522.1 uncharacterized protein LOC120072186 [Benincasa hispida]3.7e-3246.25Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHK--------------------------ASKAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK
        MA  R +I+KFDGK +FELWK KIK +LGQ K                          A   I+    D+VLRQ+++ +T Y +W KL EI+L+++LPNK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHK--------------------------ASKAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK

Query:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
         ++KE +FTYKM   K+L+ENL++FK+LSSEF+S+G+ I ++NEAFI LNSLP+++K+V+
Subjt:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]2.9e-3245.62Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN--------------------------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNK
        M   R +I+KF+ K DFELWK KIK +L + KA  AI D A                           D+VLRQ+++  TAY +W KL +I+L+++LPNK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN--------------------------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNK

Query:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
         +++E++FTYKM  +K+L++NL++FK LSS+F+S+G+ IG++NEAFI LNSLPE +K+VK
Subjt:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

XP_038889933.1 uncharacterized protein LOC120079695 [Benincasa hispida]6.8e-3446.91Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILD--------------------------QANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK
        M   R +I+KFDGK DFELWK KIKA+LGQ KA  AI D                             DNVLRQ+++ +TA+ +W KL EI+L+++L NK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILD--------------------------QANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK

Query:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT
         + ++++FTYKM  +K+L+ENL++FK+LS EF+S+G+ IG++NE FI LNSLP+++K+VK T
Subjt:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]8.9e-3449.38Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQA--------------------------NDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK
        MA  R +I+KFD K DFELWKVKIK +LGQ KA  AI D A                           DNVLRQV+   TAY +W KL EI+L+++L NK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQA--------------------------NDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK

Query:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
         +++E++FTYKM  +K+L++ L++FK+LSSEF+S+G  IG++NEAFI LNSLPE++K+ K
Subjt:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

XP_038896323.1 uncharacterized protein LOC120084587 [Benincasa hispida]4.3e-3652.08Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILD----------QANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSK
        M++AR +++KFDGKGDF LWK KIKA+L Q KA +A+L+          Q  ++      + ETAY+IWTKLEE++ +++LP+K+Y+ EK+FT+KM +SK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILD----------QANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSK

Query:  TLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
        TL+ N D+FKK+ +EFK+LGEK+ D NEA++  NSLPE+YKE+K
Subjt:  TLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein1.3e-3043.21Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN--------------------------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNK
        M  ++I+I+KFDGKGDF +WK K+KA+L Q K +K + D +                           DNVLRQV E +TA K+W+KL+ ++L++ L NK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN--------------------------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNK

Query:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT
        +Y+KE+ F +KM ++K+L +NLDDFK+++    ++ EKI D+N+A I LNSLPE+YK++K T
Subjt:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT

A0A2P5FE65 Uncharacterized protein (Fragment)1.7e-3043.75Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN--------------------------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNK
        M  ++I+I+KFDGKGDF +WK K+KA+L Q K +KA+ D +                           DNVLRQV E +TA K+W+KL+ ++L++ L NK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQAN--------------------------DNVLRQVMEVETAYKIWTKLEEIFLSRELPNK

Query:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
        +Y+KE+ F +KM ++K+L +NLDDFK+++    ++ EKI D+N+A I LNSLPE+YK++K
Subjt:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class1.1e-2945.28Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK-------------------------AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKV
        MA  R ++ KF+G GDF LW+ KI+A+L QHK +K                          IL   +D VLR V E  T  ++W KLE ++L++ LPNK+
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK-------------------------AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKV

Query:  YIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
        YIKEK+F YKM  SK L ENLD+F+K+  +  ++GEK+ D+N+A I LNSLPE Y+EVK
Subjt:  YIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

A0A5A7UB25 Putative gag-pol polyprotein7.1e-2944.65Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK-------------------------AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKV
        MA  R ++ KF+G GDF LW+ KI+A+L QHK +K                          IL   +D VLR V E  T  ++W KLE ++L++ L NK+
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK-------------------------AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKV

Query:  YIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
        YIKEK+F YKM  SK+L ENLD+F+K+  +  ++GEK+ D+N+A I LNSLPE Y+EVK
Subjt:  YIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

A0A5D3DNU1 Putative gag-pol polyprotein6.4e-3045.28Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK-------------------------AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKV
        MA  R ++ KF+G GDF LW+ KI+A+L QHK +K                          IL   +D VLR V E  T  ++W KLE ++L++ LPNK+
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASK-------------------------AILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKV

Query:  YIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK
        YIKEK+F YKM  SK+L ENLD+F+K+  +  ++GEK+ D+N+A I LNSLPE Y+EVK
Subjt:  YIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-1427.78Show/hide
Query:  MAVARIDIDKFDGKGDFELWKVKIKALL---GQHK-----------------------ASKAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK
        M+  + ++ KF+G   F  W+ +++ LL   G HK                       A+ AI    +D+V+  +++ +TA  IWT+LE +++S+ L NK
Subjt:  MAVARIDIDKFDGKGDFELWKVKIKALL---GQHK-----------------------ASKAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNK

Query:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT
        +Y+K++ +   M        +L+ F  L ++  +LG KI ++++A + LNSLP +Y  +  T
Subjt:  VYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLGEKIGDDNEAFIPLNSLPEAYKEVKLT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTCGCAAGAATCGATATTGACAAGTTCGATGGTAAAGGTGATTTTGAGTTATGGAAGGTCAAAATTAAAGCACTTCTGGGACAACATAAAGCATCCAAGGCCAT
TCTAGATCAAGCAAATGATAACGTTCTAAGGCAAGTAATGGAGGTTGAAACTGCATACAAGATATGGACGAAGTTGGAAGAAATTTTTCTCTCTAGAGAATTACCAAACA
AGGTATACATCAAAGAGAAATATTTCACTTACAAGATGGGCAACTCAAAAACCCTAAGTGAGAATCTTGACGACTTCAAGAAACTATCATCAGAATTCAAAAGCTTAGGG
GAAAAGATTGGTGATGACAACGAAGCTTTCATCCCTTTGAACTCACTTCCTGAGGCATATAAAGAAGTGAAACTCACTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTCGCAAGAATCGATATTGACAAGTTCGATGGTAAAGGTGATTTTGAGTTATGGAAGGTCAAAATTAAAGCACTTCTGGGACAACATAAAGCATCCAAGGCCAT
TCTAGATCAAGCAAATGATAACGTTCTAAGGCAAGTAATGGAGGTTGAAACTGCATACAAGATATGGACGAAGTTGGAAGAAATTTTTCTCTCTAGAGAATTACCAAACA
AGGTATACATCAAAGAGAAATATTTCACTTACAAGATGGGCAACTCAAAAACCCTAAGTGAGAATCTTGACGACTTCAAGAAACTATCATCAGAATTCAAAAGCTTAGGG
GAAAAGATTGGTGATGACAACGAAGCTTTCATCCCTTTGAACTCACTTCCTGAGGCATATAAAGAAGTGAAACTCACTTCCTGA
Protein sequenceShow/hide protein sequence
MAVARIDIDKFDGKGDFELWKVKIKALLGQHKASKAILDQANDNVLRQVMEVETAYKIWTKLEEIFLSRELPNKVYIKEKYFTYKMGNSKTLSENLDDFKKLSSEFKSLG
EKIGDDNEAFIPLNSLPEAYKEVKLTS