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Moc05g28340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g28340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon gag protein
Genome locationchr5:20855101..20857252
RNA-Seq ExpressionMoc05g28340
SyntenyMoc05g28340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]6.8e-1556.04Show/hide
Query:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANS
        IK+R TESLHDYVARFNEEKLQVE L N VSL+AFMS +RDEHLSFS GKKTP       +RAQ Y +  +   +++  +G      R  S
Subjt:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANS

XP_022150104.1 uncharacterized protein LOC111018365 [Momordica charantia]1.7e-1355.43Show/hide
Query:  RRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRGNRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        +RT ESLH+YVARFNEEKLQVE L +TVSLLAFMSGVRDEHLSFS  KKTP     +L       +  E       P   R + K E  G K
Subjt:  RRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRGNRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]6.8e-1555.56Show/hide
Query:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        IK+RTTESL DYVARFNEEKLQVE L + VSLLAFMSGVRDEHLSFS GK+TP       +RAQ Y +  +   +++   G      R + K E  G K
Subjt:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]2.6e-1453.54Show/hide
Query:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        IK+RT ESLHDYVARFNEEKLQ+E L + VSLLAFMSGVRDEHLSFS  K+TP       +RAQ Y +  +   +++   G      R + K E  G K
Subjt:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]8.3e-2145.12Show/hide
Query:  MDGYLRSVGGGQVPGILDY----------------------------------------------IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAF
        MDGYLRSVG GQVPGILDY                                              IK+RTTESLHDYVARFN+EKLQ+ESL + VSLLAF
Subjt:  MDGYLRSVGGGQVPGILDY----------------------------------------------IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAF

Query:  MSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        MSGVRDEHLSFS GKKTP       +RAQ Y +  +   +++   G      R + K E  G K
Subjt:  MSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

TrEMBL top hitse value%identityAlignment
A0A6J1D7D2 uncharacterized protein LOC1110183073.3e-1556.04Show/hide
Query:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANS
        IK+R TESLHDYVARFNEEKLQVE L N VSL+AFMS +RDEHLSFS GKKTP       +RAQ Y +  +   +++  +G      R  S
Subjt:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANS

A0A6J1D911 uncharacterized protein LOC1110183658.1e-1455.43Show/hide
Query:  RRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRGNRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        +RT ESLH+YVARFNEEKLQVE L +TVSLLAFMSGVRDEHLSFS  KKTP     +L       +  E       P   R + K E  G K
Subjt:  RRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRGNRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

A0A6J1DWY0 uncharacterized protein LOC1110252933.3e-1555.56Show/hide
Query:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        IK+RTTESL DYVARFNEEKLQVE L + VSLLAFMSGVRDEHLSFS GK+TP       +RAQ Y +  +   +++   G      R + K E  G K
Subjt:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

A0A6J1DYL6 uncharacterized protein LOC1110257854.0e-2145.12Show/hide
Query:  MDGYLRSVGGGQVPGILDY----------------------------------------------IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAF
        MDGYLRSVG GQVPGILDY                                              IK+RTTESLHDYVARFN+EKLQ+ESL + VSLLAF
Subjt:  MDGYLRSVGGGQVPGILDY----------------------------------------------IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAF

Query:  MSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        MSGVRDEHLSFS GKKTP       +RAQ Y +  +   +++   G      R + K E  G K
Subjt:  MSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

A0A6J1E1E7 uncharacterized protein LOC1110255481.3e-1453.54Show/hide
Query:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK
        IK+RT ESLHDYVARFNEEKLQ+E L + VSLLAFMSGVRDEHLSFS  K+TP       +RAQ Y +  +   +++   G      R + K E  G K
Subjt:  IKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRG-----NRAQLYTTTVKPALAEQAEQGSGPTTARANSKLEHRGIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGATATCTACGGAGTGTCGGAGGCGGTCAAGTGCCGGGTATTCTCGACTACATTAAACGGAGGACGACAGAGAGTCTACACGACTATGTAGCTCGGTTC
AACGAGGAGAAGCTGCAGGTAGAAAGCCTTAGAAACACTGTATCTCTGCTGGCCTTCATGTCCGGCGTCAGGGATGAGCATTTGTCATTTTCGTTAGGAAAGAAA
ACACCGAGGGGCAATAGGGCTCAACTCTACACGACGACGGTAAAACCAGCTCTAGCCGAGCAGGCCGAGCAGGGCTCGGGGCCGACCACTGCTCGGGCGAACTCC
AAATTGGAACATCGCGGCATAAAATACTACTTCACCGGGATAAAAGCCATCAATACTCTCTCCCGGATTCGGAAGACGAGGGCTAACCGAATCCGGGATACGGTA
TTTCGAACGCAAGTGACGCAGGTCCCTCGCCGTAAGAGTGGGGAATCGATAGTCGAGCTACAGGTTACGACCGGAGGGAAGCCCGCTGGTCCACGAGGGGTTCGA
TCCCGACCCGGTGCTCGGTCCCAACCTGGTGCTCGGCCCGCGGCCCAGCCAATGATCCCCCATCTTCGATCGACGGTTTCGCCCAAGCCCTGCAACAGTGAATTA
GGGTTAGCTACGGAAAGTTCTGGAACACCTTTACGCTATAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGATATCTACGGAGTGTCGGAGGCGGTCAAGTGCCGGGTATTCTCGACTACATTAAACGGAGGACGACAGAGAGTCTACACGACTATGTAGCTCGGTTC
AACGAGGAGAAGCTGCAGGTAGAAAGCCTTAGAAACACTGTATCTCTGCTGGCCTTCATGTCCGGCGTCAGGGATGAGCATTTGTCATTTTCGTTAGGAAAGAAA
ACACCGAGGGGCAATAGGGCTCAACTCTACACGACGACGGTAAAACCAGCTCTAGCCGAGCAGGCCGAGCAGGGCTCGGGGCCGACCACTGCTCGGGCGAACTCC
AAATTGGAACATCGCGGCATAAAATACTACTTCACCGGGATAAAAGCCATCAATACTCTCTCCCGGATTCGGAAGACGAGGGCTAACCGAATCCGGGATACGGTA
TTTCGAACGCAAGTGACGCAGGTCCCTCGCCGTAAGAGTGGGGAATCGATAGTCGAGCTACAGGTTACGACCGGAGGGAAGCCCGCTGGTCCACGAGGGGTTCGA
TCCCGACCCGGTGCTCGGTCCCAACCTGGTGCTCGGCCCGCGGCCCAGCCAATGATCCCCCATCTTCGATCGACGGTTTCGCCCAAGCCCTGCAACAGTGAATTA
GGGTTAGCTACGGAAAGTTCTGGAACACCTTTACGCTATAAGTAG
Protein sequenceShow/hide protein sequence
MDGYLRSVGGGQVPGILDYIKRRTTESLHDYVARFNEEKLQVESLRNTVSLLAFMSGVRDEHLSFSLGKKTPRGNRAQLYTTTVKPALAEQAEQGSGPTTARANS
KLEHRGIKYYFTGIKAINTLSRIRKTRANRIRDTVFRTQVTQVPRRKSGESIVELQVTTGGKPAGPRGVRSRPGARSQPGARPAAQPMIPHLRSTVSPKPCNSEL
GLATESSGTPLRYK