CuGenDBv2

Gene ID	Moc05g29530
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	mediator of RNA polymerase II transcription subunit 27
Genome location	chr5:21971839..21975573
RNA-Seq Expression	Moc05g29530
Synteny	Moc05g29530
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016310 - phosphorylation (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function) GO:0016301 - kinase activity (molecular function)
InterPro domains	IPR021627 - Mediator complex, subunit Med27

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022151438.1 mediator of RNA polymerase II transcription subunit 27 [Momordica charantia]

1.5e-229

100

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Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQ
        ISSLKDQ
Subjt:  ISSLKDQ

XP_022940393.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]

3.7e-204

88.29

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+E+  N+EPA KKPCFSHGVT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        +  +LSDILTCMEKEVPDLKIFTYERLDWLKQA AL SQAN+NSIGALKEHNYHSPRM P SL A+S DK +VIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS HHLFRHVTEHAATVLQYF+GIQ KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTS++ S VP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIE
        ++SLKDQ ++
Subjt:  ISSLKDQSIE

XP_023005694.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita maxima]

1.1e-203

88.05

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+E+  N+EPA KKPCFSHGVT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        +  +LSDILTCMEKEVPDLKIFTYERLDWLKQA  L SQAN+NSIG LKEHNYHSPRM P SL A+S DK +VIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS HHLFRHVTEHAATVLQYF+GIQ KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTS++ SAVP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIE
        ++SLKDQ ++
Subjt:  ISSLKDQSIE

XP_023539656.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo]

2.6e-205

88.78

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDE+  N+EPA KKPCFSHGVT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        +  +LSDILTC+EKEVPDLKIFTYERLDWLKQA ALSSQAN+NSIGALKEHNYHSPRM P SL A+S DK +VIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS HHLFRHVTEHAATVLQYF+GIQ KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTS++ SAVP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIE
        ++SLKDQ ++
Subjt:  ISSLKDQSIE

XP_038904949.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida]

6.4e-204

86.22

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Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQQPAQGQTATVSPNTA PHS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EPALKKPCFSHGVT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        + R+LS+ILTCMEKEVP+LKIFTYERLDWLKQA AL SQAN+NSIG LKEH+YHSPRM PGSL A+  DK  VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS HHLFRHVTEHAATVLQYFLG Q KAALYPLLLWICSYQNLFSKACSKCG+LLSVNKQSDLLLPPA+RPYKQFC S+  S+VP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIED----RVDCDS
        I+SLKDQ ++      +DC S
Subjt:  ISSLKDQSIED----RVDCDS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT1 Uncharacterized protein

1.4e-196

83.25

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MR  QQP+QGQTATVSP+T   HS  S ++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQS+KPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EPALKKPCFSHGVT++KQ+EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        + R+LSDIL+CMEKEVP+LKIFTYERLDWLKQA AL SQAN+NSIGALKEH+YHSPRM PG+L A+  DK  VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS +HLFRHVTEHAATVLQYFLG Q KAALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPPA+RPYKQFC S+  S VP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIED----RVDCDSNAV
        I+SLKDQ ++      +DC S  +
Subjt:  ISSLKDQSIED----RVDCDSNAV

A0A1S3B7L6 mediator of RNA polymerase II transcription subunit 27

4.8e-197

83.02

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MR  QQP+QGQTATVSPNT   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQS+KPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EPALKKPCFSHGVT++KQ+EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        + R+LSDIL+C+EKEVP+LKIFTYERLDWLKQA AL SQAN+NSIGALKEH+YHSPRM PG+L A+  DK  VIELIIPSVFRAVVSLHP+GSVEPDA+A
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS +H+FRHVTEHAATVLQYFLG Q KAALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP +RPYKQFC S+  SAVP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIED----RVDCDSNAV
        I+SLKDQ ++      +DC S  +
Subjt:  ISSLKDQSIED----RVDCDSNAV

A0A6J1DC62 mediator of RNA polymerase II transcription subunit 27

7.3e-230

100

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQ
        ISSLKDQ
Subjt:  ISSLKDQ

A0A6J1FP59 mediator of RNA polymerase II transcription subunit 27

1.8e-204

88.29

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+E+  N+EPA KKPCFSHGVT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        +  +LSDILTCMEKEVPDLKIFTYERLDWLKQA AL SQAN+NSIGALKEHNYHSPRM P SL A+S DK +VIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS HHLFRHVTEHAATVLQYF+GIQ KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTS++ S VP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIE
        ++SLKDQ ++
Subjt:  ISSLKDQSIE

A0A6J1KZZ9 mediator of RNA polymerase II transcription subunit 27

5.3e-204

88.05

Show/hide

Query:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+E+  N+EPA KKPCFSHGVT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELN

Query:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA
        +  +LSDILTCMEKEVPDLKIFTYERLDWLKQA  L SQAN+NSIG LKEHNYHSPRM P SL A+S DK +VIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  EPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP
        FF+PDERGS+VHARGFS HHLFRHVTEHAATVLQYF+GIQ KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTS++ SAVP
Subjt:  FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVP

Query:  ISSLKDQSIE
        ++SLKDQ ++
Subjt:  ISSLKDQSIE

SwissProt top hits

e value

%identity

Alignment

Q8RWM3 Mediator of RNA polymerase II transcription subunit 27

1.5e-123

62.1

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Query:  NTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNS
        N A   +  S  +APPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V + P  +  PL LF +ED SMRQHL+DLR +GK+LEESGVL+ESL SRSNS
Subjt:  NTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNS

Query:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVP
        WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH+DD   L +EP+ KK   SH + E  ++E  + +TL DI + +EK VP
Subjt:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVP

Query:  DLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVAFFAPDERGSYVHARGFS
         +K+ TY RL+WLK+A +L    +D+   A K     S ++  G L     DK++VIEL  PS+FRA+VSL P GSV+PDAVAFF+PDE GSY+HARGFS
Subjt:  DLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVAFFAPDERGSYVHARGFS

Query:  VHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQ
        V+H+++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++
Subjt:  VHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G09180.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

1.1e-124

62.1

Show/hide

Query:  NTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNS
        N A   +  S  +APPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V + P  +  PL LF +ED SMRQHL+DLR +GK+LEESGVL+ESL SRSNS
Subjt:  NTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNS

Query:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVP
        WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH+DD   L +EP+ KK   SH + E  ++E  + +TL DI + +EK VP
Subjt:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVP

Query:  DLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVAFFAPDERGSYVHARGFS
         +K+ TY RL+WLK+A +L    +D+   A K     S ++  G L     DK++VIEL  PS+FRA+VSL P GSV+PDAVAFF+PDE GSY+HARGFS
Subjt:  DLKIFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVAFFAPDERGSYVHARGFS

Query:  VHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQ
        V+H+++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++
Subjt:  VHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQ

Sequences

Show/hide sequences

CDS sequence

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ATGCGCCAGACGCAGCAGCCAGCGCAGGGCCAGACTGCGACGGTGAGCCCTAACACTGCTGCGCCTCACTCCGGCGGCTCTGCAGAGGAGGCGCCGCCGAAGCAGGTGGC
ACTCGCCATGGATAGACTCGGCCACGCCGCCCGTCTCATCGCCGACATCAGGCTCGGCGCCGATCGCCTTCTCGAAGCCCTATGCGTCACCGCGCACCCTCACCAGAGCA
CCAAGCCTCTCCACTTGTTTCAGAAAGAAGACGATTCGATGCGCCAACACCTCCGAGACCTTCGCGCAGTTGGAAAGCAGCTCGAAGAGTCTGGTGTTCTCAGTGAATCT
CTTCTTTCACGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGACGGTGCAGTGGTTGCTTATGCTTGGAAACGTCAACTGGCTGGTCAGGCGGGTGCATC
TGCAGTTGACCGGACGAGGTTAGCTCTTAAGGCCTTCACTGACCAGAAAAGACGGTTCTTCCCTCATCTTGATGATGAAAGCAGGTTGAATCTTGAGCCTGCTCTGAAGA
AGCCTTGTTTTTCTCACGGAGTGACAGAGATTAAACAAGACGAGCTTAATGAACCTAGAACACTTTCAGATATTCTAACATGTATGGAAAAGGAAGTGCCAGATCTTAAG
ATTTTCACTTACGAGCGATTAGACTGGTTGAAACAAGCTCCAGCACTTTCCTCACAAGCAAATGATAATTCGATCGGAGCACTAAAAGAACATAACTATCATAGTCCTAG
GATGGGCCCTGGATCACTTGCTGCCAGTTCCAAAGATAAAGTTTCTGTGATTGAGTTGATTATTCCTTCTGTCTTTAGGGCCGTAGTATCACTGCATCCAGTTGGTTCCG
TAGAACCAGATGCTGTAGCTTTCTTTGCTCCTGATGAGAGAGGCAGCTATGTGCATGCCAGGGGTTTTTCAGTTCATCATTTGTTTAGACACGTGACGGAGCATGCTGCC
ACTGTGCTGCAGTATTTTCTTGGAATTCAAGAAAAAGCAGCTCTATATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGCGG
ACGGCTACTTTCTGTTAATAAACAATCAGATTTATTGTTACCTCCTGCCATTCGCCCTTACAAGCAGTTTTGTACATCAAGAGTCTTATCAGCTGTGCCCATATCCTCAC
TGAAAGACCAGAGCATTGAAGACCGTGTGGACTGTGATTCAAATGCTGTACAATATCTGGATTCTTTATTGATAATATGCTCACAATCAGAAGAGGATGCAGCCCGCTTG
CTATCTTGTGGTGCTGCTTTTGGTGATTCACTAGCTTGTGCATTATATTTCCTTCCAGATTATTCATTGGAATCCATGGTGATGTCAAAAGAACCGTTGATTTTCTGTTG
GCTCAAGTAG

mRNA sequence

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Protein sequence

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MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSES
LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEPALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVPDLK
IFTYERLDWLKQAPALSSQANDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVAFFAPDERGSYVHARGFSVHHLFRHVTEHAA
TVLQYFLGIQEKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVPISSLKDQSIEDRVDCDSNAVQYLDSLLIICSQSEEDAARL
LSCGAAFGDSLACALYFLPDYSLESMVMSKEPLIFCWLK

Moc05g29530 (gene) of Bitter gourd (OHB3-1) v2 genome