; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc05g32090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g32090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGlycine rich RNA binding protein
Genome locationchr5:24019202..24021872
RNA-Seq ExpressionMoc05g32090
SyntenyMoc05g32090
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3957296.1 hypothetical protein CMV_017676 [Castanea mollissima]5.7e-4978.2Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF S  RRVL G S  +SS+   Q Q+T+IRF +TLT+PKLF+SGLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

RWR95450.1 RNA recognition motif domain-containing protein [Cinnamomum micranthum f. kanehirae]9.8e-4979.7Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MA +SAFRRVLNGSS ASS+    Q+ F++IR  STLT PKLFVSGLSRLTTD+ LK+AFSPFGQL+EAKVITDR SGRSKGFGFV YA++EEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPP+P  EP+E
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

XP_022145577.1 organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia]8.8e-66100Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

XP_023877122.1 organelle RRM domain-containing protein 2, mitochondrial [Quercus suber]2.2e-4877.44Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF S  RRVL G S  +SS+   Q  +T+IRF +TLT+PKLF+SGLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

XP_042943832.1 organelle RRM domain-containing protein 2, mitochondrial [Carya illinoinensis]4.8e-4877.44Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF  + RR+L+GSS ASS L     Q+ +IRF +TLT+PKLF+SGLSRLTTD+KLKEAFSPFGQL++AKVI DRA+GRSKGFGFVTYASIEEAEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP++
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

TrEMBL top hitse value%identityAlignment
A0A1U8AE68 glycine-rich RNA-binding protein 6, mitochondrial4.0e-4878.2Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF SAFRR L+GSS  SS L   Q++  +IR  STLT PKLF+SGLSRLTTD+KLKEAFSPFG L+EAKVI DR SGRSKGFGFVTYA+IE+AEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

A0A3S3NHY1 RNA recognition motif domain-containing protein4.7e-4979.7Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MA +SAFRRVLNGSS ASS+    Q+ F++IR  STLT PKLFVSGLSRLTTD+ LK+AFSPFGQL+EAKVITDR SGRSKGFGFV YA++EEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPP+P  EP+E
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

A0A5B7A8G9 RRM domain-containing protein1.8e-4878.2Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAFASAFRR+LNGSS  SS +     QF +IR  STLT PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAKVI DRASGRSKGFGFVTYA+I++A KA+E 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAK+LDGWVIFVDPAKPREPRPPPQP  +P+E
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

A0A6J1CX06 organelle RRM domain-containing protein 2, mitochondrial-like4.3e-66100Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

A0A7N2LNA5 RRM domain-containing protein1.1e-4877.44Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF S  RRVL G S  +SS+   Q  +T+IRF +TLT+PKLF+SGLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE
        MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE

SwissProt top hitse value%identityAlignment
C0HFE5 Organelle RRM domain-containing protein 1, chloroplastic3.3e-1550.63Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        +LFV+GLS  T++  L+ AF PFG+LVE K+I DR S RSKG+ FV Y + E    A + MN + ++GW+I VD AK R
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q8L440 Organelle RRM domain-containing protein 1, chloroplastic5.6e-1549.37Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        KLF++GLS  T++  L+ AF  FG+LVE K+I D+ S RSKG+ F+ Y + E A  A +EMN K ++GW+I VD AK +
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q9FFZ6 Small RNA-binding protein 11, chloroplastic9.3e-1851.52Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+AS +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial8.9e-2155.68Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH
        LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YA++E++ K    M+ KFLDGWVIF + A+PRE     QP +
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH

Q9FZ84 Glycine-rich RNA-binding protein 6, mitochondrial8.7e-1655.56Show/hide
Query:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+FV GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY SIE A  A + M  K LDG +I V PA
Subjt:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA

Arabidopsis top hitse value%identityAlignment
AT1G18630.1 glycine-rich RNA-binding protein 66.2e-1755.56Show/hide
Query:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+FV GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY SIE A  A + M  K LDG +I V PA
Subjt:  TLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA

AT2G27330.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.1e-1642.34Show/hide
Query:  LQQFQFQ-FTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        L QF ++ FT + F  + ++  LFV G+S  +T++ L +AFS +GQ+++  VI D+   R KGF +VT++S EEAEKA  E+NA+ +DG V+ +D  K  
Subjt:  LQQFQFQ-FTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Query:  EPRPP-PQPNH
        +  PP  +PNH
Subjt:  EPRPP-PQPNH

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-4069.05Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE
        MAF S+FRR++ GSS   SS          +R  STLT+P+LFVSGLSRLTT++KL++AF+ FGQLV+A+VITDR SGRSKGFGFVTYA+IE+AEKA+ E
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQ
        MNAKFLDGWVIFVDPA+PREPR P Q
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQ

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein6.6e-1951.52Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+AS +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.4e-2255.68Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH
        LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YA++E++ K    M+ KFLDGWVIF + A+PRE     QP +
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTCGCTTCTGCCTTTCGACGAGTTCTCAATGGATCTTCCTTCGCTTCCTCTTCTCTTCAGCAATTCCAATTCCAATTCACCGCCATTCGTTTCGGTTCCACTCT
CACAGCTCCCAAACTCTTCGTTAGCGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAGCTTGTTGAAGCAAAAGTTATTACTG
ATCGAGCCTCTGGAAGATCAAAGGGCTTCGGTTTTGTTACTTACGCAAGCATTGAGGAAGCCGAGAAGGCGAGAGAAGAAATGAATGCCAAGTTCCTGGATGGGTGGGTT
ATTTTTGTTGACCCAGCCAAACCAAGGGAGCCTAGGCCGCCTCCGCAACCAAACCACGAGCCTACGGAAGAGGAACCCCACGCCCATCTCACGTGCTTCAACAGGCGCCC
CTTGGCCGCCGCAATGGCTGCTGCTGCTGGCCAATTTGAGAGAGACCCACCAAAAGAAAACCAAAACCCATTTCCAGAATTCCCATTTCCTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTCGCTTCTGCCTTTCGACGAGTTCTCAATGGATCTTCCTTCGCTTCCTCTTCTCTTCAGCAATTCCAATTCCAATTCACCGCCATTCGTTTCGGTTCCACTCT
CACAGCTCCCAAACTCTTCGTTAGCGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAGCTTGTTGAAGCAAAAGTTATTACTG
ATCGAGCCTCTGGAAGATCAAAGGGCTTCGGTTTTGTTACTTACGCAAGCATTGAGGAAGCCGAGAAGGCGAGAGAAGAAATGAATGCCAAGTTCCTGGATGGGTGGGTT
ATTTTTGTTGACCCAGCCAAACCAAGGGAGCCTAGGCCGCCTCCGCAACCAAACCACGAGCCTACGGAAGAGGAACCCCACGCCCATCTCACGTGCTTCAACAGGCGCCC
CTTGGCCGCCGCAATGGCTGCTGCTGCTGGCCAATTTGAGAGAGACCCACCAAAAGAAAACCAAAACCCATTTCCAGAATTCCCATTTCCTTCATAA
Protein sequenceShow/hide protein sequence
MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWV
IFVDPAKPREPRPPPQPNHEPTEEEPHAHLTCFNRRPLAAAMAAAAGQFERDPPKENQNPFPEFPFPS