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Moc06g00480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g00480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr6:320578..320952
RNA-Seq ExpressionMoc06g00480
SyntenyMoc06g00480
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW16203.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]4.9e-0736.36Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK
        ++ +E  G L L+L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+H+V   +      K ++S  G++L     I  E ++F+ KLY K
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK

RVW60988.1 putative ribonuclease H protein [Vitis vinifera]2.2e-0737.37Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK
        ++ +E  G L L+L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+HRV   +      K ++S+ G++L     I  E ++F+ KLY K
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK

RVW67743.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.9e-0737.37Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK
        ++ +E  G L L+L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+HRV   +      K ++ REG++L     I  E ++F+  LY K
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK

RVX16267.1 putative mitochondrial protein [Vitis vinifera]2.2e-0735.04Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIKE
        ++ +E  G L L L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+HRV   +      K ++S  G++L     I  E ++F+  LY K 
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIKE

Query:  WIRGLFQKISIGTKFPS
           G  +K+   T F S
Subjt:  WIRGLFQKISIGTKFPS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]3.1e-0942.39Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQEK-----VILSREGQSLLTDNDIGAEFIDF
        ++ LE + P+  +    R + +E LL + AKEE+F  Q+ K KWL EGDENT+F+HR L  + +      ILS++G  L    DI  EFIDF
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQEK-----VILSREGQSLLTDNDIGAEFIDF

TrEMBL top hitse value%identityAlignment
A0A438BZ12 LINE-1 retrotransposable element ORF2 protein2.4e-0736.36Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK
        ++ +E  G L L+L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+H+V   +      K ++S  G++L     I  E ++F+ KLY K
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK

A0A438FLV0 Putative ribonuclease H protein1.1e-0737.37Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK
        ++ +E  G L L+L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+HRV   +      K ++S+ G++L     I  E ++F+ KLY K
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK

A0A438G6A4 Transposon TX1 uncharacterized 149 kDa protein2.4e-0737.37Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK
        ++ +E  G L L+L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+HRV   +      K ++ REG++L     I  E ++F+  LY K
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIK

A0A438K4Y9 Putative mitochondrial protein1.1e-0735.04Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIKE
        ++ +E  G L L L+ ER   R++L  L  KEE    QK +VKW+ EGD N++F+HRV   +      K ++S  G++L     I  E ++F+  LY K 
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQE-----KVILSREGQSLLTDNDIGAEFIDFYQKLYIKE

Query:  WIRGLFQKISIGTKFPS
           G  +K+   T F S
Subjt:  WIRGLFQKISIGTKFPS

A0A6J1E2G6 uncharacterized protein LOC1110254051.5e-0942.39Show/hide
Query:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQEK-----VILSREGQSLLTDNDIGAEFIDF
        ++ LE + P+  +    R + +E LL + AKEE+F  Q+ K KWL EGDENT+F+HR L  + +      ILS++G  L    DI  EFIDF
Subjt:  MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQEK-----VILSREGQSLLTDNDIGAEFIDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein1.3e-0536.23Show/hide
Query:  AAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQEKVILSREGQSLL----TDNDIGAEFIDFYQKLYI
        AA  ESF  QK ++KWL +GD NTRF+H       KVIL+ + ++L+     D+D+  E +   +++ +
Subjt:  AAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQEKVILSREGQSLL----TDNDIGAEFIDFYQKLYI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCCTTGGAAGATACGGGCCCTCTTCCTCTAAATCTTATCGAAGAAAGATTCAAAATCAGGGAACAGCTTCTCTGTCTTGCAGCCAAGGAAGAATCTTTCCAGCC
CCAAAAGTTCAAAGTGAAATGGCTTGGAGAAGGAGACGAAAATACAAGATTTTACCACAGAGTGCTTTGCCTCCAAGAAAAGGTAATCCTTTCTAGAGAGGGCCAAAGTT
TACTTACAGACAATGACATTGGGGCTGAATTCATAGATTTCTATCAGAAGCTTTATATAAAAGAGTGGATCAGAGGTTTATTCCAAAAAATCTCCATTGGAACCAAATTC
CCATCGATCTCAACCATGAATTGGAGAAAGATTTTACTGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCCTTGGAAGATACGGGCCCTCTTCCTCTAAATCTTATCGAAGAAAGATTCAAAATCAGGGAACAGCTTCTCTGTCTTGCAGCCAAGGAAGAATCTTTCCAGCC
CCAAAAGTTCAAAGTGAAATGGCTTGGAGAAGGAGACGAAAATACAAGATTTTACCACAGAGTGCTTTGCCTCCAAGAAAAGGTAATCCTTTCTAGAGAGGGCCAAAGTT
TACTTACAGACAATGACATTGGGGCTGAATTCATAGATTTCTATCAGAAGCTTTATATAAAAGAGTGGATCAGAGGTTTATTCCAAAAAATCTCCATTGGAACCAAATTC
CCATCGATCTCAACCATGAATTGGAGAAAGATTTTACTGAAGTAG
Protein sequenceShow/hide protein sequence
MESLEDTGPLPLNLIEERFKIREQLLCLAAKEESFQPQKFKVKWLGEGDENTRFYHRVLCLQEKVILSREGQSLLTDNDIGAEFIDFYQKLYIKEWIRGLFQKISIGTKF
PSISTMNWRKILLK