; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g01880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g01880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr6:1343707..1344774
RNA-Seq ExpressionMoc06g01880
SyntenyMoc06g01880
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-2560.16Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD
        LKDKL+SQ+L SV ANLVESS  ++DR K    +KGK      +EK    Q K  GG+I+K KL+ YVCGK GHKSYQC QRK R  Q+ TPQANL E D
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD

Query:  DIIAAVVVEANLVENKSDWILDT
          I A +VEANL+ENK+DWILDT
Subjt:  DIIAAVVVEANLVENKSDWILDT

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-2560.16Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD
        LKDKL+SQ+L SV ANLVESS  ++DR K    +KGK      +EK    Q K  GG+I+K KL+ YVCGK GHKSYQC QRK R  Q+ TPQANL E D
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD

Query:  DIIAAVVVEANLVENKSDWILDT
          I A +VEANL+ENK+DWILDT
Subjt:  DIIAAVVVEANLVENKSDWILDT

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-2560.16Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD
        LKDKL+SQ+L SV ANLVESS  ++DR K    +KGK      +EK    Q K  GG+I+K KL+ YVCGK GHKSYQC QRK R  Q+ TPQANL E D
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD

Query:  DIIAAVVVEANLVENKSDWILDT
          I A +VEANL+ENK+DWILDT
Subjt:  DIIAAVVVEANLVENKSDWILDT

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]5.6e-3484.78Show/hide
Query:  FKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLVENKSDWILDT
        FKNKGKTI RDRA+KNK LQPKN GGRIEKSKL+ YVC K  HKSYQCTQ+KDR DQRATPQANLTETDDII  VVVE NLVENKSDWILDT
Subjt:  FKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLVENKSDWILDT

XP_022156023.1 uncharacterized protein LOC111022991 [Momordica charantia]2.5e-4280.67Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIA
        LKDKLSSQSL SVK NLVESSSASKDRFK KGK IARDRA+KNK L+PKN GGR+EK KL+ YVC K GHKSYQCTQ+KDRKDQR  PQAN+ ET +IIA
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIA

Query:  AVVVEANLVENKSDWILDT
         VVVEANLVENKS+WILDT
Subjt:  AVVVEANLVENKSDWILDT

TrEMBL top hitse value%identityAlignment
A0A5D3C5T2 Ty1-copia retrotransposon protein1.0e-2560.16Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD
        LKDKL+SQ+L SV ANLVESS  ++DR K    +KGK      +EK    Q K  GG+I+K KL+ YVCGK GHKSYQC QRK R  Q+ TPQANL E D
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD

Query:  DIIAAVVVEANLVENKSDWILDT
          I A +VEANL+ENK+DWILDT
Subjt:  DIIAAVVVEANLVENKSDWILDT

A0A5D3DJE2 Ty1-copia retrotransposon protein1.0e-2560.16Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD
        LKDKL+SQ+L SV ANLVESS  ++DR K    +KGK      +EK    Q K  GG+I+K KL+ YVCGK GHKSYQC QRK R  Q+ TPQANL E D
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD

Query:  DIIAAVVVEANLVENKSDWILDT
          I A +VEANL+ENK+DWILDT
Subjt:  DIIAAVVVEANLVENKSDWILDT

A0A5D3DSQ3 Ty1-copia retrotransposon protein1.0e-2560.16Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD
        LKDKL+SQ+L SV ANLVESS  ++DR K    +KGK      +EK    Q K  GG+I+K KL+ YVCGK GHKSYQC QRK R  Q+ TPQANL E D
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFK----NKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETD

Query:  DIIAAVVVEANLVENKSDWILDT
          I A +VEANL+ENK+DWILDT
Subjt:  DIIAAVVVEANLVENKSDWILDT

A0A6J1DHJ4 uncharacterized protein LOC1110211472.7e-3484.78Show/hide
Query:  FKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLVENKSDWILDT
        FKNKGKTI RDRA+KNK LQPKN GGRIEKSKL+ YVC K  HKSYQCTQ+KDR DQRATPQANLTETDDII  VVVE NLVENKSDWILDT
Subjt:  FKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLVENKSDWILDT

A0A6J1DPG7 uncharacterized protein LOC1110229911.2e-4280.67Show/hide
Query:  LKDKLSSQSLYSVKANLVESSSASKDRFKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIA
        LKDKLSSQSL SVK NLVESSSASKDRFK KGK IARDRA+KNK L+PKN GGR+EK KL+ YVC K GHKSYQCTQ+KDRKDQR  PQAN+ ET +IIA
Subjt:  LKDKLSSQSLYSVKANLVESSSASKDRFKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKDQRATPQANLTETDDIIA

Query:  AVVVEANLVENKSDWILDT
         VVVEANLVENKS+WILDT
Subjt:  AVVVEANLVENKSDWILDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTATCCGATCTGGGAAGGTCCTACCGGACTTGTCAAAATTGGAATCACTCGACGGATCCAACTATCGCCGATGGCTAAAGGATAAGCTCTCTTCTCAATCTCT
ATATTCAGTTAAAGCTAATTTAGTTGAATCTTCTAGTGCTTCCAAAGACAGGTTCAAGAATAAAGGGAAGACAATTGCAAGGGATAGAGCTGAAAAGAACAAATGTCTCC
AACCTAAAAATCATGGTGGAAGAATCGAGAAATCCAAACTGATCTACTATGTCTGTGGAAAAGTCGGGCACAAATCCTATCAGTGCACTCAGAGGAAAGATAGGAAAGAT
CAAAGGGCTACTCCACAAGCCAACCTTACAGAGACGGATGACATCATTGCCGCTGTGGTTGTGGAAGCGAATCTAGTAGAGAACAAATCCGACTGGATTCTTGACACATG
A
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTATCCGATCTGGGAAGGTCCTACCGGACTTGTCAAAATTGGAATCACTCGACGGATCCAACTATCGCCGATGGCTAAAGGATAAGCTCTCTTCTCAATCTCT
ATATTCAGTTAAAGCTAATTTAGTTGAATCTTCTAGTGCTTCCAAAGACAGGTTCAAGAATAAAGGGAAGACAATTGCAAGGGATAGAGCTGAAAAGAACAAATGTCTCC
AACCTAAAAATCATGGTGGAAGAATCGAGAAATCCAAACTGATCTACTATGTCTGTGGAAAAGTCGGGCACAAATCCTATCAGTGCACTCAGAGGAAAGATAGGAAAGAT
CAAAGGGCTACTCCACAAGCCAACCTTACAGAGACGGATGACATCATTGCCGCTGTGGTTGTGGAAGCGAATCTAGTAGAGAACAAATCCGACTGGATTCTTGACACATG
A
Protein sequenceShow/hide protein sequence
MAAIRSGKVLPDLSKLESLDGSNYRRWLKDKLSSQSLYSVKANLVESSSASKDRFKNKGKTIARDRAEKNKCLQPKNHGGRIEKSKLIYYVCGKVGHKSYQCTQRKDRKD
QRATPQANLTETDDIIAAVVVEANLVENKSDWILDT