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Moc06g03380 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g03380
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description40S ribosomal protein S28-1-like
Genome locationchr6:2410449..2414572
RNA-Seq ExpressionMoc06g03380
SyntenyMoc06g03380
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4913629.1 hypothetical protein JHK86_054062 [Glycine max]3.5e-2690.67Show/hide
Query:  PVSL-VFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        PV+L VF  RMESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  PVSL-VFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG7961624.1 hypothetical protein I3843_09G026100 [Carya illinoinensis]3.5e-2690.14Show/hide
Query:  LVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        ++ + RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  LVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KGN63808.2 hypothetical protein Csa_014218 [Cucumis sativus]3.5e-26100Show/hide
Query:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

PON44916.1 Ribosomal protein [Parasponia andersonii]6.0e-2673.53Show/hide
Query:  TLN-LTSLSCLSAR--RRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        TLN  +S S +S R  RRRL +         L  ++RM+SQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARR
Subjt:  TLN-LTSLSCLSAR--RRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

Query:  LR
        LR
Subjt:  LR

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]5.0e-57100Show/hide
Query:  MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Query:  VREGDILTLLESEREARRLR
        VREGDILTLLESEREARRLR
Subjt:  VREGDILTLLESEREARRLR

TrEMBL top hitse value%identityAlignment
A0A2P5B837 Ribosomal protein2.9e-2673.53Show/hide
Query:  TLN-LTSLSCLSAR--RRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        TLN  +S S +S R  RRRL +         L  ++RM+SQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARR
Subjt:  TLN-LTSLSCLSAR--RRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

Query:  LR
        LR
Subjt:  LR

A0A5N6R7X9 Uncharacterized protein3.8e-2687.84Show/hide
Query:  PVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        P   ++  RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  PVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1C0B5 40S ribosomal protein S28-1-like2.4e-57100Show/hide
Query:  MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Query:  VREGDILTLLESEREARRLR
        VREGDILTLLESEREARRLR
Subjt:  VREGDILTLLESEREARRLR

A0A6J1HTG7 40S ribosomal protein S28-14.9e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

W9SEX7 40S ribosomal protein S283.8e-2694.12Show/hide
Query:  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        ++RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-29.9e-2489.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S281.2e-2490.77Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S288.7e-2076.47Show/hide
Query:  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        ASR++  IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S288.7e-2076.47Show/hide
Query:  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        ASR++  IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  ASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-12.6e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.9e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.9e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S287.1e-2589.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCGCCACTGCCATTGTTGACTGAGGGTTGCCTCCGATCTCATCTCGCGCCTCACAGAACTCTCAATCTCACCTCGCTCTCTTGCCTCTCAGCCCGTCGCCGCCG
TCTGTCGTCGTTTGCCGTTCGTCCGCCGCCAGTCTCTCTCGTCTTCGCCTCGAGGATGGAATCTCAGATTAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACCGGAT
CTAGGGGGCAGGTAACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATCATGAGGAATGTGAAGGGACCAGTGAGGGAAGGCGATATTCTGACCCTGCTG
GAGTCTGAGAGAGAAGCTAGGAGATTGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCGCCACTGCCATTGTTGACTGAGGGTTGCCTCCGATCTCATCTCGCGCCTCACAGAACTCTCAATCTCACCTCGCTCTCTTGCCTCTCAGCCCGTCGCCGCCG
TCTGTCGTCGTTTGCCGTTCGTCCGCCGCCAGTCTCTCTCGTCTTCGCCTCGAGGATGGAATCTCAGATTAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACCGGAT
CTAGGGGGCAGGTAACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATCATGAGGAATGTGAAGGGACCAGTGAGGGAAGGCGATATTCTGACCCTGCTG
GAGTCTGAGAGAGAAGCTAGGAGATTGCGTTGA
Protein sequenceShow/hide protein sequence
MTSPLPLLTEGCLRSHLAPHRTLNLTSLSCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL
ESEREARRLR