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Moc06g05220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g05220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationchr6:3783866..3786507
RNA-Seq ExpressionMoc06g05220
SyntenyMoc06g05220
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5514425.1 hypothetical protein DKX38_028331 [Salix brachista]8.5e-1583.33Show/hide
Query:  QEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGG
        + F C    +GFDEYMNLVLDDAEEVNIKKKSKK+LGRILLKGDNITLMMNTGG
Subjt:  QEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGG

MCI19947.1 small nuclear ribonucleoprotein E-like [Trifolium medium]9.4e-1495.45Show/hide
Query:  EGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        +GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNTG
Subjt:  EGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

XP_020227736.1 small nuclear ribonucleoprotein E [Cajanus cajan]1.2e-13100Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

XP_022135003.1 small nuclear ribonucleoprotein E-like [Momordica charantia]1.2e-13100Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

XP_027332277.1 small nuclear ribonucleoprotein E-like isoform X1 [Abrus precatorius]1.9e-1489.58Show/hide
Query:  GIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        G I++GFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNTG
Subjt:  GIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

TrEMBL top hitse value%identityAlignment
A0A2N9ELL8 Sm protein E9.2e-1585.19Show/hide
Query:  MQEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        M   VC +IL GFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNTG
Subjt:  MQEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

A0A392Q7T6 Sm protein E (Fragment)4.6e-1495.45Show/hide
Query:  EGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        +GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNTG
Subjt:  EGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

A0A5N5JA39 Small nuclear ribonucleoprotein E4.1e-1583.33Show/hide
Query:  QEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGG
        + F C    +GFDEYMNLVLDDAEEVNIKKKSKK+LGRILLKGDNITLMMNTGG
Subjt:  QEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGG

A0A6J1C3K6 Small nuclear ribonucleoprotein E6.0e-14100Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

A0A6J1I7N4 Small nuclear ribonucleoprotein E6.0e-14100Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

SwissProt top hitse value%identityAlignment
A4FUI2 Small nuclear ribonucleoprotein E2.3e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E2.3e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E2.3e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E2.3e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

Q7ZUG0 Small nuclear ribonucleoprotein E1.7e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEV++K K++K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein9.1e-1582.22Show/hide
Query:  LEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        + GFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNTG
Subjt:  LEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.7e-0572.41Show/hide
Query:  LEGFDEYMNLVLDDAEEVNIKKKSKKTLG
        + GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  LEGFDEYMNLVLDDAEEVNIKKKSKKTLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein9.1e-1582.22Show/hide
Query:  LEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
        + GFDEYMNLVLD+AEEV+IKKK++K LGRILLKGDNITLMMN G
Subjt:  LEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAATTTGTTTGTGGCATTATCTTGGAAGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACT
TGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACTGGTGGTGTACTGGTGGAGCGTTGTTTGAGAACGGCTGGTTACTTCGAGAGGATATTTGTTT
CCCTGAATTTGTTTTACTTCCACTGGGCCTCAATTGATTGTCTTCGTCCCGGAGAAAACAGCATCATCTTCCCAATCCCGTGTATGATTGACTACCAAGTTATGGATGAT
GGCTTAAAAATCAGCCCAAGCTCTTCAGCAGTACGAGTACTGAAGTTCAAACCATTGTCCAGGATAAAAAGCCTCATGAAAAAGGCCCATAGGAGCAGGAAGCACAGGAC
GCTCACAAAAATGTTCAATAGTGCATTCTATTCACACCTGGAGGATTCTGATGCTTTGTTTCAATCTTCATGTAGCCAGAAGGCTAAGGTAGAAGAGCAAACAGTAGCGA
GGACGATAATATACAAATTCACTATTATGCATGGTCAAACTCAAACATATGATCCATTACCTTATCATCGGCAAAGGAATCAACCATCCGCCGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAATTTGTTTGTGGCATTATCTTGGAAGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACT
TGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACTGGTGGTGTACTGGTGGAGCGTTGTTTGAGAACGGCTGGTTACTTCGAGAGGATATTTGTTT
CCCTGAATTTGTTTTACTTCCACTGGGCCTCAATTGATTGTCTTCGTCCCGGAGAAAACAGCATCATCTTCCCAATCCCGTGTATGATTGACTACCAAGTTATGGATGAT
GGCTTAAAAATCAGCCCAAGCTCTTCAGCAGTACGAGTACTGAAGTTCAAACCATTGTCCAGGATAAAAAGCCTCATGAAAAAGGCCCATAGGAGCAGGAAGCACAGGAC
GCTCACAAAAATGTTCAATAGTGCATTCTATTCACACCTGGAGGATTCTGATGCTTTGTTTCAATCTTCATGTAGCCAGAAGGCTAAGGTAGAAGAGCAAACAGTAGCGA
GGACGATAATATACAAATTCACTATTATGCATGGTCAAACTCAAACATATGATCCATTACCTTATCATCGGCAAAGGAATCAACCATCCGCCGCGTGA
Protein sequenceShow/hide protein sequence
MQEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGGVLVERCLRTAGYFERIFVSLNLFYFHWASIDCLRPGENSIIFPIPCMIDYQVMDD
GLKISPSSSAVRVLKFKPLSRIKSLMKKAHRSRKHRTLTKMFNSAFYSHLEDSDALFQSSCSQKAKVEEQTVARTIIYKFTIMHGQTQTYDPLPYHRQRNQPSAA