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Moc06g07450 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g07450
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:5423981..5428591
RNA-Seq ExpressionMoc06g07450
SyntenyMoc06g07450
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]8.7e-1395.35Show/hide
Query:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL
        QPEENWKS LIKYLKDGILPTEKIEAQQLQ+RAARYVLKDDNL
Subjt:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL

XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]3.9e-2937.04Show/hide
Query:  GEPVASLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEEN-------------WKSPLIKYLKDGIL-----PTEK
        GEPV  L KATDLSGEARPSPGHRLNSTTLDRG  AEEVESVPLT E++ VNIG KLG +  E+             W    +  +  G++       E 
Subjt:  GEPVASLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEEN-------------WKSPLIKYLKDGIL-----PTEK

Query:  IEAQQLQRRA---------ARYV-----------------------------------------------------------------------------
         +  + +RRA         A +V                                                                             
Subjt:  IEAQQLQRRA---------ARYV-----------------------------------------------------------------------------

Query:  -----LKDDNLDLVVTTK----------------------RQVLSKQRSLHNYSSSVLRVWVIVMENENDPKRDKELKS---DWGRPARDITGRPKE
             + D      VT++                      RQVLSKQRSLHNYSSSVLRV  IVMEN+NDPKRDKELKS   DWGRPARD+TGRPKE
Subjt:  -----LKDDNLDLVVTTK----------------------RQVLSKQRSLHNYSSSVLRVWVIVMENENDPKRDKELKS---DWGRPARDITGRPKE

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]6.0e-6269.27Show/hide
Query:  MNPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNST
        MNPDESHRCFEEKSLK+ ADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKAR SPGYRLNPTTLDKG PVA LIKATDLSG+ARPSPGHRLNST
Subjt:  MNPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNST

Query:  TLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLKDG--ILPTEKIEAQQLQRRAARYVLKDDNLDLVVTTKRQVLSKQRS
        TLDRGEPAEEVESVPLTAEDR VNIG KLG +  E+    LI +L+    +      +   + R    + L  D     V  KR+  +++R+
Subjt:  TLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLKDG--ILPTEKIEAQQLQRRAARYVLKDDNLDLVVTTKRQVLSKQRS

XP_022158042.1 uncharacterized protein LOC111024621 [Momordica charantia]3.5e-1440Show/hide
Query:  NPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNSTT
        NP E  +CFEE+SL+  A+ L E  PSPD Q NPTT D GEPV G+                           P+    +A D  GE   SP    + T 
Subjt:  NPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNSTT

Query:  LDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLK
         DRGEP +EVES+PLT++DR VNIG +LG +     ++ LI +L+
Subjt:  LDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLK

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]2.1e-14100Show/hide
Query:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL
        QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL
Subjt:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL

TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H4.2e-1395.35Show/hide
Query:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL
        QPEENWKS LIKYLKDGILPTEKIEAQQLQ+RAARYVLKDDNL
Subjt:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL

A0A6J1DPJ5 uncharacterized protein LOC1110230161.9e-2937.04Show/hide
Query:  GEPVASLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEEN-------------WKSPLIKYLKDGIL-----PTEK
        GEPV  L KATDLSGEARPSPGHRLNSTTLDRG  AEEVESVPLT E++ VNIG KLG +  E+             W    +  +  G++       E 
Subjt:  GEPVASLIKATDLSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEEN-------------WKSPLIKYLKDGIL-----PTEK

Query:  IEAQQLQRRA---------ARYV-----------------------------------------------------------------------------
         +  + +RRA         A +V                                                                             
Subjt:  IEAQQLQRRA---------ARYV-----------------------------------------------------------------------------

Query:  -----LKDDNLDLVVTTK----------------------RQVLSKQRSLHNYSSSVLRVWVIVMENENDPKRDKELKS---DWGRPARDITGRPKE
             + D      VT++                      RQVLSKQRSLHNYSSSVLRV  IVMEN+NDPKRDKELKS   DWGRPARD+TGRPKE
Subjt:  -----LKDDNLDLVVTTK----------------------RQVLSKQRSLHNYSSSVLRVWVIVMENENDPKRDKELKS---DWGRPARDITGRPKE

A0A6J1DVC6 Ribonuclease H2.9e-6269.27Show/hide
Query:  MNPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNST
        MNPDESHRCFEEKSLK+ ADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKAR SPGYRLNPTTLDKG PVA LIKATDLSG+ARPSPGHRLNST
Subjt:  MNPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNST

Query:  TLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLKDG--ILPTEKIEAQQLQRRAARYVLKDDNLDLVVTTKRQVLSKQRS
        TLDRGEPAEEVESVPLTAEDR VNIG KLG +  E+    LI +L+    +      +   + R    + L  D     V  KR+  +++R+
Subjt:  TLDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLKDG--ILPTEKIEAQQLQRRAARYVLKDDNLDLVVTTKRQVLSKQRS

A0A6J1DW49 uncharacterized protein LOC1110246211.7e-1440Show/hide
Query:  NPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNSTT
        NP E  +CFEE+SL+  A+ L E  PSPD Q NPTT D GEPV G+                           P+    +A D  GE   SP    + T 
Subjt:  NPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNSTT

Query:  LDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLK
         DRGEP +EVES+PLT++DR VNIG +LG +     ++ LI +L+
Subjt:  LDRGEPAEEVESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLK

A0A6J1DZU0 Ribonuclease H1.0e-14100Show/hide
Query:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL
        QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL
Subjt:  QPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGTGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCAC
CCTTGACGGGGGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCGGGAAAGGCAAGGTCGAGCCCTGGTTATCGACTTAATCCGACCACCCTTGATAAGGGAG
AACCAGTGGCGAGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAG
GTAGAATCTGTCCCTCTGACAGCCGAAGATCGATGGGTCAATATCGGACCCAAGTTGGGGAGGCAACCAGAAGAAAACTGGAAGAGCCCTTTGATCAAATATTTGAAAGA
TGGGATCCTGCCTACTGAAAAGATAGAGGCCCAGCAGCTACAACGACGAGCGGCCAGATATGTGCTTAAAGACGACAATCTTGATCTCGTGGTAACGACAAAGCGACAAG
TACTCTCAAAACAAAGATCATTACACAATTATTCGTCTTCTGTTTTGAGAGTGTGGGTCATTGTTATGGAGAACGAAAATGACCCGAAACGAGACAAGGAGTTGAAGTCT
GATTGGGGAAGACCGGCCCGGGACATAACGGGCCGGCCAAAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGTGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCAC
CCTTGACGGGGGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCGGGAAAGGCAAGGTCGAGCCCTGGTTATCGACTTAATCCGACCACCCTTGATAAGGGAG
AACCAGTGGCGAGCCTGATTAAAGCGACAGATCTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAG
GTAGAATCTGTCCCTCTGACAGCCGAAGATCGATGGGTCAATATCGGACCCAAGTTGGGGAGGCAACCAGAAGAAAACTGGAAGAGCCCTTTGATCAAATATTTGAAAGA
TGGGATCCTGCCTACTGAAAAGATAGAGGCCCAGCAGCTACAACGACGAGCGGCCAGATATGTGCTTAAAGACGACAATCTTGATCTCGTGGTAACGACAAAGCGACAAG
TACTCTCAAAACAAAGATCATTACACAATTATTCGTCTTCTGTTTTGAGAGTGTGGGTCATTGTTATGGAGAACGAAAATGACCCGAAACGAGACAAGGAGTTGAAGTCT
GATTGGGGAAGACCGGCCCGGGACATAACGGGCCGGCCAAAAGAGTGA
Protein sequenceShow/hide protein sequence
MNPDESHRCFEEKSLKEVADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARSSPGYRLNPTTLDKGEPVASLIKATDLSGEARPSPGHRLNSTTLDRGEPAEE
VESVPLTAEDRWVNIGPKLGRQPEENWKSPLIKYLKDGILPTEKIEAQQLQRRAARYVLKDDNLDLVVTTKRQVLSKQRSLHNYSSSVLRVWVIVMENENDPKRDKELKS
DWGRPARDITGRPKE