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Moc06g07580 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g07580
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:5513406..5522091
RNA-Seq ExpressionMoc06g07580
SyntenyMoc06g07580
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151715.1 uncharacterized protein LOC111019628 [Momordica charantia]6.1e-0447.54Show/hide
Query:  ISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        I   S S+ VG ++ E   Q ++PRM KYLS+V++ L QF  YE+ Q+PR+ N NA+ALA+
Subjt:  ISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]3.1e-0867.24Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E   Q RE RM KYLSQV+NQL+QFSKYEIRQIPRA NVNA+ALAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]1.1e-0867.24Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E   Q REPRMAKYLSQV+NQL+QFSKYEI QIPRA NV+A+ALAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]1.2e-0765.52Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E+  Q RE RMAKYLSQV+NQL+QFSKYEIRQIP A NVNA+ LAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]4.5e-0763.79Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E   Q REPRMAKYLS+VK+QL QFSK+EIRQIP   NVNA+ALAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

TrEMBL top hitse value%identityAlignment
A0A6J1DBZ0 uncharacterized protein LOC1110196283.0e-0447.54Show/hide
Query:  ISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        I   S S+ VG ++ E   Q ++PRM KYLS+V++ L QF  YE+ Q+PR+ N NA+ALA+
Subjt:  ISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

A0A6J1DJC7 Ribonuclease H1.5e-0867.24Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E   Q RE RM KYLSQV+NQL+QFSKYEIRQIPRA NVNA+ALAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

A0A6J1DVC6 Ribonuclease H1.2e-0867.24Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E   Q REPRMAKYLSQV+NQL+QFSKYEI QIPRA NV+A+ALAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

A0A6J1DZU0 Ribonuclease H5.8e-0865.52Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E+  Q RE RMAKYLSQV+NQL+QFSKYEIRQIP A NVNA+ LAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

A0A6J1E1Q5 uncharacterized protein LOC1110256232.2e-0763.79Show/hide
Query:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR
        LS S+ +  ++ E   Q REPRMAKYLS+VK+QL QFSK+EIRQIP   NVNA+ALAR
Subjt:  LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCGGGGTGCTCGGTCGGTGAGCACAAGCACTGTCTTTTATCCGACCTGCCGCCACCATCACCACTCCTGGCCACTGCCGCAGCCTGCAACAGGAGCCAGT
TGCATTGGACACCCAACTCCCTCCGGCTTACCAGGTGAGGCTGCAAATCATGTGGGAATTTGCACAACGGTTCTGCACGAATCGAGCTCGAACCCGGTCTCCGGT
TCCGACCTGAACACTAGAGTGGACCTGCACAAGAGGGCAAGCACTCCGACGCTCAAGTCAGTGACGGATCCGACAGCACACATGACCGGTGGTTACATGTCTTTT
CTCATATCGGACCTGTCGGGTTCCGAGCAGGTCGGTCCCCGGTTGGGTGAAAGAGGAGTTCAGGATAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAAA
AACCAGCTCAACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCATAACGTCAACGCCAATGCATTAGCTCGATACTACAACTCGAAGGTTATTGTA
ACTAATCTTCGACAGGACAATCTTCCTACTAATAAAGTCTTTGACATTCGACGTGATACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCCGGGGTGCTCGGTCGGTGAGCACAAGCACTGTCTTTTATCCGACCTGCCGCCACCATCACCACTCCTGGCCACTGCCGCAGCCTGCAACAGGAGCCAGT
TGCATTGGACACCCAACTCCCTCCGGCTTACCAGGTGAGGCTGCAAATCATGTGGGAATTTGCACAACGGTTCTGCACGAATCGAGCTCGAACCCGGTCTCCGGT
TCCGACCTGAACACTAGAGTGGACCTGCACAAGAGGGCAAGCACTCCGACGCTCAAGTCAGTGACGGATCCGACAGCACACATGACCGGTGGTTACATGTCTTTT
CTCATATCGGACCTGTCGGGTTCCGAGCAGGTCGGTCCCCGGTTGGGTGAAAGAGGAGTTCAGGATAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAAA
AACCAGCTCAACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCATAACGTCAACGCCAATGCATTAGCTCGATACTACAACTCGAAGGTTATTGTA
ACTAATCTTCGACAGGACAATCTTCCTACTAATAAAGTCTTTGACATTCGACGTGATACTTAA
Protein sequenceShow/hide protein sequence
MTRGARSVSTSTVFYPTCRHHHHSWPLPQPATGASCIGHPTPSGLPGEAANHVGICTTVLHESSSNPVSGSDLNTRVDLHKRASTPTLKSVTDPTAHMTGGYMSF
LISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALARYYNSKVIVTNLRQDNLPTNKVFDIRRDT