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Moc06g09260 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g09260
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr6:6774331..6779727
RNA-Seq ExpressionMoc06g09260
SyntenyMoc06g09260
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG66648.1 hypothetical protein EZV62_007923 [Acer yangbiense]2.6e-0531.18Show/hide
Query:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE
        +AE +A+  G++  RE  L+PC+++ DS  + +L+ F    ++++G F+A I  +    + +  +FV R     AH + K GL   AD+ W E
Subjt:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE

TXG70342.1 hypothetical protein EZV62_005277 [Acer yangbiense]2.0e-0530Show/hide
Query:  VSEFRKAISRPLEDVSVTPELLPEVWVPPSAGLFKV--DAALDFE-----------------------------RVDLAEDMAVNFGIRLAREMALFPCV
        V EFR A  +     +V   L+P  W PP +GLFKV  DA +D E                                + E +A+   + LA +  L PC 
Subjt:  VSEFRKAISRPLEDVSVTPELLPEVWVPPSAGLFKV--DAALDFE-----------------------------RVDLAEDMAVNFGIRLAREMALFPCV

Query:  LEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE
        LE D+  + N +  +     EVG FV  I+    +  + S SF  R  N  AH +VK GL    D  W E
Subjt:  LEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]2.6e-0537.93Show/hide
Query:  VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKS
        VD AE +A   G+R+A E  + P +LE DS RI NL   +   + + G  +  +K      + VS SF KR GN +AH + +R L+S
Subjt:  VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKS

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]7.2e-1130.37Show/hide
Query:  IVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVDLAEDMAVNFGIRLA
        +V  A  +V EFR+A S P    V+ T E+L   W+PP   ++K++    F                               + VD+AE +    G++LA
Subjt:  IVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVDLAEDMAVNFGIRLA

Query:  REMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLTHLLSL
         ++ + P +LE DS RI NL    + D+ E G  V   K    + +  S +FVKR GN+ AH + +R L     SIW E+ PL L   L +
Subjt:  REMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLTHLLSL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.8e-0626.83Show/hide
Query:  YNSTPKSITK---AIVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVD
        +N + K++ K    +V  A  +  EFR+A S P+   V+ T E+L   W PP  G++K++    F                               + VD
Subjt:  YNSTPKSITK---AIVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVD

Query:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLT
        +AE +A   G++LA E+ + P +                 D+ E G  V   K    + +  S +FVKR GN+ AH + +R L     SIW E+ PL L 
Subjt:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLT

Query:  HLLSL
          L +
Subjt:  HLLSL

TrEMBL top hitse value%identityAlignment
A0A5C7IC42 Uncharacterized protein1.3e-0531.18Show/hide
Query:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE
        +AE +A+  G++  RE  L+PC+++ DS  + +L+ F    ++++G F+A I  +    + +  +FV R     AH + K GL   AD+ W E
Subjt:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE

A0A5C7IPG1 RNase H domain-containing protein9.8e-0630Show/hide
Query:  VSEFRKAISRPLEDVSVTPELLPEVWVPPSAGLFKV--DAALDFE-----------------------------RVDLAEDMAVNFGIRLAREMALFPCV
        V EFR A  +     +V   L+P  W PP +GLFKV  DA +D E                                + E +A+   + LA +  L PC 
Subjt:  VSEFRKAISRPLEDVSVTPELLPEVWVPPSAGLFKV--DAALDFE-----------------------------RVDLAEDMAVNFGIRLAREMALFPCV

Query:  LEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE
        LE D+  + N +  +     EVG FV  I+    +  + S SF  R  N  AH +VK GL    D  W E
Subjt:  LEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFE

A0A6J1CDQ4 uncharacterized protein LOC1110105331.3e-0537.93Show/hide
Query:  VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKS
        VD AE +A   G+R+A E  + P +LE DS RI NL   +   + + G  +  +K      + VS SF KR GN +AH + +R L+S
Subjt:  VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKS

A0A6J1CIF1 uncharacterized protein LOC1110112373.5e-1130.37Show/hide
Query:  IVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVDLAEDMAVNFGIRLA
        +V  A  +V EFR+A S P    V+ T E+L   W+PP   ++K++    F                               + VD+AE +    G++LA
Subjt:  IVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVDLAEDMAVNFGIRLA

Query:  REMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLTHLLSL
         ++ + P +LE DS RI NL    + D+ E G  V   K    + +  S +FVKR GN+ AH + +R L     SIW E+ PL L   L +
Subjt:  REMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLTHLLSL

A0A6J1DAR4 uncharacterized protein LOC1110189548.8e-0726.83Show/hide
Query:  YNSTPKSITK---AIVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVD
        +N + K++ K    +V  A  +  EFR+A S P+   V+ T E+L   W PP  G++K++    F                               + VD
Subjt:  YNSTPKSITK---AIVNRAAAFVSEFRKAISRPLED-VSVTPELLPEVWVPPSAGLFKVDAALDF-------------------------------ERVD

Query:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLT
        +AE +A   G++LA E+ + P +                 D+ E G  V   K    + +  S +FVKR GN+ AH + +R L     SIW E+ PL L 
Subjt:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFEN-PLSLT

Query:  HLLSL
          L +
Subjt:  HLLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGGCCAGCTTCATTACAACTCAACCCCAAAGTCCATAACTAAGGCCATTGTGAATCGGGCGGCCGCTTTTGTGTCTGAATTTCGGAAGGCTATTTCTCGT
CCGCTTGAGGATGTATCTGTAACACCCGAATTGCTTCCGGAGGTTTGGGTTCCTCCTTCGGCGGGCTTGTTTAAGGTTGATGCTGCTTTGGATTTCGAGCGTGTT
GATCTGGCAGAGGATATGGCGGTGAACTTTGGAATTCGACTAGCTCGGGAGATGGCTTTGTTTCCGTGTGTTTTGGAAATGGATTCATACCGTATCTCCAACCTA
TTGCAATTTGAAACTCATGATATTTTTGAGGTTGGTCATTTTGTTGCGATGATAAAGGCTATGGAGTTGAAGGAGGTGGTGGTGTCTACCAGTTTTGTCAAGAGG
AGAGGGAATGAGGTGGCTCACAAGATAGTTAAAAGAGGTTTGAAGTCTGGTGCTGATTCCATCTGGTTTGAGAATCCCCTTTCTCTCACGCATCTACTGTCTCTG
CTTCATTTCAACTCTGCTACTGCTTCTGTTACATTTACGGTTTTGGATTTGCAATGTTCTCGATTGGTTCTTAATAGGGTTTTGTGGTTCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCGGCCAGCTTCATTACAACTCAACCCCAAAGTCCATAACTAAGGCCATTGTGAATCGGGCGGCCGCTTTTGTGTCTGAATTTCGGAAGGCTATTTCTCGT
CCGCTTGAGGATGTATCTGTAACACCCGAATTGCTTCCGGAGGTTTGGGTTCCTCCTTCGGCGGGCTTGTTTAAGGTTGATGCTGCTTTGGATTTCGAGCGTGTT
GATCTGGCAGAGGATATGGCGGTGAACTTTGGAATTCGACTAGCTCGGGAGATGGCTTTGTTTCCGTGTGTTTTGGAAATGGATTCATACCGTATCTCCAACCTA
TTGCAATTTGAAACTCATGATATTTTTGAGGTTGGTCATTTTGTTGCGATGATAAAGGCTATGGAGTTGAAGGAGGTGGTGGTGTCTACCAGTTTTGTCAAGAGG
AGAGGGAATGAGGTGGCTCACAAGATAGTTAAAAGAGGTTTGAAGTCTGGTGCTGATTCCATCTGGTTTGAGAATCCCCTTTCTCTCACGCATCTACTGTCTCTG
CTTCATTTCAACTCTGCTACTGCTTCTGTTACATTTACGGTTTTGGATTTGCAATGTTCTCGATTGGTTCTTAATAGGGTTTTGTGGTTCTACTGA
Protein sequenceShow/hide protein sequence
MTGQLHYNSTPKSITKAIVNRAAAFVSEFRKAISRPLEDVSVTPELLPEVWVPPSAGLFKVDAALDFERVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNL
LQFETHDIFEVGHFVAMIKAMELKEVVVSTSFVKRRGNEVAHKIVKRGLKSGADSIWFENPLSLTHLLSLLHFNSATASVTFTVLDLQCSRLVLNRVLWFY