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Moc06g09280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g09280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRep-A_N domain-containing protein
Genome locationchr6:6783990..6792186
RNA-Seq ExpressionMoc06g09280
SyntenyMoc06g09280
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0044249 - cellular biosynthetic process (biological process)
GO:1901576 - organic substance biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD44309.1 TPA_asm: hypothetical protein HUJ06_002539 [Nelumbo nucifera]5.0e-2061.4Show/hide
Query:  ITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRT-TRSLPLDFGAAAAAAIDLEGNGLKNAVER------VLL
        +TAPT+  +T PPA MLSKKFL +GEIPGPAASATSGIT++AV  AAV+PVTAFS  DDRT + +L LD   A+ A  DL+G GLK A E       +  
Subjt:  ITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRT-TRSLPLDFGAAAAAAIDLEGNGLKNAVER------VLL

Query:  VNGRAIESAEVDAI
        VNG AIE+AEVDAI
Subjt:  VNGRAIESAEVDAI

KAA0055792.1 Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa]8.8e-2560.48Show/hide
Query:  ITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAIDL-EGNGLKNAVER----VLLVN
        +TAP +ATTTAPPAA+LSKKF ++G+ P PAASATSGITIDA   AAV P TAFSF DDRT   LPL+ GAAA    DL EGNGLK A       V  VN
Subjt:  ITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAIDL-EGNGLKNAVER----VLLVN

Query:  GRAIESAEVDAI----WCEIRKLK
        G+AIE+AEV+AI    W E++ ++
Subjt:  GRAIESAEVDAI----WCEIRKLK

KAB5553081.1 hypothetical protein DKX38_010392 [Salix brachista]1.1e-1963Show/hide
Query:  GAQLRLTGSKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLP-LDFGAAAAAAIDLEGNGLK
        G  +RLTGSK +TP TAP +AT+T PPAAMLSKK L DG++PGPAASATSGITI+AV+ AAVSPVTAFSFK+  T+   P LDF     A   L+ +GL+
Subjt:  GAQLRLTGSKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLP-LDFGAAAAAAIDLEGNGLK

KAG6590026.1 hypothetical protein SDJN03_15449, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2772.65Show/hide
Query:  MATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAIDLE----GNGLKNA----VERVLLVNGR
        MATTT PPAAMLSKKF SDGE PGPAASATSGITIDAV  AAVSPV AFSFKDDRT  SLPLD GAAA A  DLE    GNGLK A    +  V LVNGR
Subjt:  MATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAIDLE----GNGLKNA----VERVLLVNGR

Query:  AIESAEVDAIWCEIRKL
        A E+ EV+AI   IRKL
Subjt:  AIESAEVDAIWCEIRKL

RXH74777.1 hypothetical protein DVH24_029498 [Malus domestica]1.1e-1959.35Show/hide
Query:  SKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAA---IDLEGNGLKNAVER-
        SK DTP TAP + T T PPAA+LSKKF  +GE P  AASATSGITI+AVS AAV PVTAFSF ++  TRSLPLDF AA A+A   +   G+GLK      
Subjt:  SKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAA---IDLEGNGLKNAVER-

Query:  -----VLLVNGRAIESAEVDAIW
             V LVNG AI +A VDAI+
Subjt:  -----VLLVNGRAIESAEVDAIW

TrEMBL top hitse value%identityAlignment
A0A218WXK4 Rep-A_N domain-containing protein3.5e-1951.82Show/hide
Query:  SAMGAQ-----LRLTGSKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAI-
        SA+G Q     +RLTGSK  TPITAPT+  +T PPA +L +KFL +G+ P PAASATSGITI+AV  AAVSPV AFS + +  T + P DF A       
Subjt:  SAMGAQ-----LRLTGSKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAI-

Query:  -DLEGNGLKNAVERVL-----LVNGRAIESAEVDAIW
          L G+GLK      L     +VNG AIE+AEV+AI+
Subjt:  -DLEGNGLKNAVERVL-----LVNGRAIESAEVDAIW

A0A498HYV1 Rep-A_N domain-containing protein5.4e-2059.35Show/hide
Query:  SKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAA---IDLEGNGLKNAVER-
        SK DTP TAP + T T PPAA+LSKKF  +GE P  AASATSGITI+AVS AAV PVTAFSF ++  TRSLPLDF AA A+A   +   G+GLK      
Subjt:  SKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAA---IDLEGNGLKNAVER-

Query:  -----VLLVNGRAIESAEVDAIW
             V LVNG AI +A VDAI+
Subjt:  -----VLLVNGRAIESAEVDAIW

A0A498KLC5 Rep-A_N domain-containing protein7.1e-2061.98Show/hide
Query:  SKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAID-LEGNGLKNAVER---
        SK  TP TAPT+ TTT PPAAMLSKKFL +GE P  AASATSGITI+AVS AAV PVTAFSFK +  T SLPLDF AA A A + L G GL         
Subjt:  SKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAID-LEGNGLKNAVER---

Query:  ---VLLVNGRAIESAEVDAIW
           V LVNG AI +A V AI+
Subjt:  ---VLLVNGRAIESAEVDAIW

A0A5A7UIW0 Replication protein A 70 kDa DNA-binding subunit4.3e-2560.48Show/hide
Query:  ITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAIDL-EGNGLKNAVER----VLLVN
        +TAP +ATTTAPPAA+LSKKF ++G+ P PAASATSGITIDA   AAV P TAFSF DDRT   LPL+ GAAA    DL EGNGLK A       V  VN
Subjt:  ITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAIDL-EGNGLKNAVER----VLLVN

Query:  GRAIESAEVDAI----WCEIRKLK
        G+AIE+AEV+AI    W E++ ++
Subjt:  GRAIESAEVDAI----WCEIRKLK

A0A5N5MFU5 PABS domain-containing protein5.4e-2063Show/hide
Query:  GAQLRLTGSKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLP-LDFGAAAAAAIDLEGNGLK
        G  +RLTGSK +TP TAP +AT+T PPAAMLSKK L DG++PGPAASATSGITI+AV+ AAVSPVTAFSFK+  T+   P LDF     A   L+ +GL+
Subjt:  GAQLRLTGSKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLP-LDFGAAAAAAIDLEGNGLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACTCTGCCACTTGACCAACCAAACCTTTGTAGATTATCGTCTTCAGGGTGCAGCGTATCACAATTGCACCTTTCAAAGGACTCCCAAAGCGATTGTGCGGCACT
TGGGAGCCCCAAGCAAGTCAACCAACGAGAATCGGATAGCCGGCAGCACCACAGCTATATATCGAACCTCCACCGCTGTTCTCGAGAAAACGGTTTTGGAAAACAAGGCG
TGAACATGCAAAGTGGCGATGAATCACTTGCCACAAAAAATACAATGAAAAATGTGCAATCCTCGTTCTCCCTTACCCGTACGCTCCGCGCCATTGATGGTCCCACTTCC
AACTACCGTCCCCCAGATCCTCACACGTCTCTCAGCAACAACGTCAATTCAAGCACAAGTTATGCCTCTGTTATGGAACAGAAAAACATCAAGTTCTTAGAAGCCTTGAC
GATTTTGGAGGGATTAAGAAGCATCGGTAATGAAGACGATAAAGAGATTTACCTGGAGACGGATTCGTTGGAGATGGAGAAGTTGTTGAACAACGCCGACGCAGATATCA
CTGAAATTCATTGGATTGTTGACGAAATTAAATCCCTCATGGTGGAAAAATCGGTGGTCTCTGTCCTTTTCATCAGATGGGAAACAAATTCTTTGGCTCACATGGTTGCT
CGTCGGGCTTCGGCAATGGGGGCTCAGCTACGCTTGACCGGATCGAAGTTCGACACGCCGATAACAGCTCCGACTATGGCTACCACCACCGCTCCACCGGCGGCAATGCT
GAGCAAGAAGTTCTTGAGCGACGGAGAAATTCCAGGACCGGCAGCCTCAGCAACCTCCGGAATCACCATCGACGCCGTCAGCACGGCGGCCGTGAGTCCGGTGACGGCCT
TCTCCTTCAAGGACGATCGGACGACGAGGAGCCTGCCGTTGGATTTCGGGGCGGCGGCGGCGGCGGCGATCGACCTGGAAGGCAATGGATTGAAGAATGCGGTGGAGAGG
GTCTTGTTGGTCAACGGCAGGGCCATTGAAAGTGCAGAAGTTGACGCCATTTGGTGTGAGATTCGGAAGCTAAAGCGGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTACTCTGCCACTTGACCAACCAAACCTTTGTAGATTATCGTCTTCAGGGTGCAGCGTATCACAATTGCACCTTTCAAAGGACTCCCAAAGCGATTGTGCGGCACT
TGGGAGCCCCAAGCAAGTCAACCAACGAGAATCGGATAGCCGGCAGCACCACAGCTATATATCGAACCTCCACCGCTGTTCTCGAGAAAACGGTTTTGGAAAACAAGGCG
TGAACATGCAAAGTGGCGATGAATCACTTGCCACAAAAAATACAATGAAAAATGTGCAATCCTCGTTCTCCCTTACCCGTACGCTCCGCGCCATTGATGGTCCCACTTCC
AACTACCGTCCCCCAGATCCTCACACGTCTCTCAGCAACAACGTCAATTCAAGCACAAGTTATGCCTCTGTTATGGAACAGAAAAACATCAAGTTCTTAGAAGCCTTGAC
GATTTTGGAGGGATTAAGAAGCATCGGTAATGAAGACGATAAAGAGATTTACCTGGAGACGGATTCGTTGGAGATGGAGAAGTTGTTGAACAACGCCGACGCAGATATCA
CTGAAATTCATTGGATTGTTGACGAAATTAAATCCCTCATGGTGGAAAAATCGGTGGTCTCTGTCCTTTTCATCAGATGGGAAACAAATTCTTTGGCTCACATGGTTGCT
CGTCGGGCTTCGGCAATGGGGGCTCAGCTACGCTTGACCGGATCGAAGTTCGACACGCCGATAACAGCTCCGACTATGGCTACCACCACCGCTCCACCGGCGGCAATGCT
GAGCAAGAAGTTCTTGAGCGACGGAGAAATTCCAGGACCGGCAGCCTCAGCAACCTCCGGAATCACCATCGACGCCGTCAGCACGGCGGCCGTGAGTCCGGTGACGGCCT
TCTCCTTCAAGGACGATCGGACGACGAGGAGCCTGCCGTTGGATTTCGGGGCGGCGGCGGCGGCGGCGATCGACCTGGAAGGCAATGGATTGAAGAATGCGGTGGAGAGG
GTCTTGTTGGTCAACGGCAGGGCCATTGAAAGTGCAGAAGTTGACGCCATTTGGTGTGAGATTCGGAAGCTAAAGCGGTGGTGA
Protein sequenceShow/hide protein sequence
MGTLPLDQPNLCRLSSSGCSVSQLHLSKDSQSDCAALGSPKQVNQRESDSRQHHSYISNLHRCSRENGFGKQGVNMQSGDESLATKNTMKNVQSSFSLTRTLRAIDGPTS
NYRPPDPHTSLSNNVNSSTSYASVMEQKNIKFLEALTILEGLRSIGNEDDKEIYLETDSLEMEKLLNNADADITEIHWIVDEIKSLMVEKSVVSVLFIRWETNSLAHMVA
RRASAMGAQLRLTGSKFDTPITAPTMATTTAPPAAMLSKKFLSDGEIPGPAASATSGITIDAVSTAAVSPVTAFSFKDDRTTRSLPLDFGAAAAAAIDLEGNGLKNAVER
VLLVNGRAIESAEVDAIWCEIRKLKRW