; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g09380 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g09380
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:6851860..6855687
RNA-Seq ExpressionMoc06g09380
SyntenyMoc06g09380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036760.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-1130.09Show/hide
Query:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------GSEFESMISVISTKSGPQ
        E    D    + +    +KIS VKL DDN +SWKFQ LTALE                                        G+E++ MI VIS ++   
Subjt:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------GSEFESMISVISTKSGPQ

Query:  TVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNH
        +VQD+M+LLLTQE++IE   +                           NS+ F   + + N                         PQMSA++ +  LN 
Subjt:  TVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNH

Query:  DTNWYPDLGATNHLTHNFNNLVVVSQ
        D+NWYP+LGATNHL HN +NL   S+
Subjt:  DTNWYPDLGATNHLTHNFNNLVVVSQ

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-1235.52Show/hide
Query:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP
        GS+++SMISVIS ++   +VQ+VM+LLLTQE++ E K  LI+ +  +PS N+ T     G E+    N   + NNH          G +NR R      P
Subjt:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP

Query:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ
           +   L                             T     PQMSA++  L LN D+NWYPD GATNHLTH+ +NL + S+
Subjt:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ

TYJ95829.1 putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. makuwa]8.4e-1229.67Show/hide
Query:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------------------------
        E    D    + +   G+KIS VKL DDN +SWKFQ LTALE                                                          
Subjt:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------------------------

Query:  --GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLS
          G+E++ MI VIS ++   +VQD+M+LLLTQE++IE K   I  D ++P+ N+T      K+N                   R+ + L           
Subjt:  --GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLS

Query:  TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ
               +MSA++ +  LN D+NWYP+LGATNHL HN +NL   S+
Subjt:  TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-1235.52Show/hide
Query:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP
        GS+++SMISVIS ++   +VQ+VM+LLLTQE++ E K  LI+ +  +PS N+ T     G E+    N   + NNH          G +NR R      P
Subjt:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP

Query:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ
           +   L                             T     PQMSA++  L LN D+NWYPD GATNHLTH+ +NL + S+
Subjt:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ

XP_022147537.1 uncharacterized protein LOC111016442 [Momordica charantia]7.4e-2484.72Show/hide
Query:  REFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQTLSSSPLSI
        +EFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVV ++ L S+ + +
Subjt:  REFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQTLSSSPLSI

TrEMBL top hitse value%identityAlignment
A0A5A7T077 Putative mitochondrial protein9.1e-1230.09Show/hide
Query:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------GSEFESMISVISTKSGPQ
        E    D    + +    +KIS VKL DDN +SWKFQ LTALE                                        G+E++ MI VIS ++   
Subjt:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------GSEFESMISVISTKSGPQ

Query:  TVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNH
        +VQD+M+LLLTQE++IE   +                           NS+ F   + + N                         PQMSA++ +  LN 
Subjt:  TVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNH

Query:  DTNWYPDLGATNHLTHNFNNLVVVSQ
        D+NWYP+LGATNHL HN +NL   S+
Subjt:  DTNWYPDLGATNHLTHNFNNLVVVSQ

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-1335.52Show/hide
Query:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP
        GS+++SMISVIS ++   +VQ+VM+LLLTQE++ E K  LI+ +  +PS N+ T     G E+    N   + NNH          G +NR R      P
Subjt:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP

Query:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ
           +   L                             T     PQMSA++  L LN D+NWYPD GATNHLTH+ +NL + S+
Subjt:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ

A0A5D3B9Z0 Putative copia-like retrotransposon Hopscotch polyprotein4.1e-1229.67Show/hide
Query:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------------------------
        E    D    + +   G+KIS VKL DDN +SWKFQ LTALE                                                          
Subjt:  ESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALE----------------------------------------------------------

Query:  --GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLS
          G+E++ MI VIS ++   +VQD+M+LLLTQE++IE K   I  D ++P+ N+T      K+N                   R+ + L           
Subjt:  --GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANLTHAAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLS

Query:  TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ
               +MSA++ +  LN D+NWYP+LGATNHL HN +NL   S+
Subjt:  TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-1335.52Show/hide
Query:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP
        GS+++SMISVIS ++   +VQ+VM+LLLTQE++ E K  LI+ +  +PS N+ T     G E+    N   + NNH          G +NR R      P
Subjt:  GSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANL-THAAAMGKENDAPRNSAQFENNH----------GATNRFREFKDLLP

Query:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ
           +   L                             T     PQMSA++  L LN D+NWYPD GATNHLTH+ +NL + S+
Subjt:  LVLVLILLS----------------------------TKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQ

A0A6J1D2M1 uncharacterized protein LOC1110164423.6e-2484.72Show/hide
Query:  REFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQTLSSSPLSI
        +EFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVV ++ L S+ + +
Subjt:  REFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQTLSSSPLSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTCTCCCGATCCTCACGCAGTGAATCTGCTGGCAACGATGGAATTCAATGCAATCTAGTGGTAAATCCGGGTAACAAGATCTCTACCGTGAAGTTAACT
GATGATAATTTTCTTTCGTGGAAATTTCAAGATCTCACTGCCCTAGAAGGATCTGAGTTTGAGTCGATGATTTCTGTTATTTCTACGAAATCTGGTCCTCAAACA
GTACAAGATGTCATGGCTCTATTATTGACACAAGAAAATAGAATTGAAAGAAAGAAGAGTTTGATTAATTTTGATTGCACTATTCCTTCAGCCAATCTTACACAT
GCTGCTGCTATGGGCAAAGAGAATGATGCTCCTAGAAATAGCGCTCAGTTTGAGAATAACCATGGGGCAACTAATCGATTTCGAGAGTTCAAAGACCTCCTTCCT
CTGGTTCTAGTTCTTATTCTCCTCAGTACCAAACGGCCAATTTCTCCTCAAATGTCTGCACTGCTTACTACTCTACATTTGAATCATGATACCAACTGGTATCCT
GATTTGGGTGCAACTAATCACCTCACTCATAATTTCAACAACTTGGTTGTTGTATCCCAAACTTTGTCCTCCTCTCCCTTATCCATTTCTGTTCGGTCCTCATCT
CTTATACCTGCATCTGCACTACTTGCGTCTGCTTCTTTGCCTGTAGCTACTGCTGGTTGTTTAAATTCTGCACCTATTAATACCGTGGTTGCTGCTCCTATCACG
ATTCCTAATACTATTGTATCTCTCAATGATGTACCAGCTGTTGTACCTCATGATAATGTGTCTGCTCCTACAATTGATGGGTCACAATCCATACTTCCTACTGTT
GTACATGGCGTACCGGTTTTATCTTATGGTTCCTTGGATGTATCTCAATCTGATGGTTCTTCCGCTGGTACTTCATTACCTGCATCTTCTTCTTCTGAGCCGTTG
ATCTCTACCCCTCTTATACGTAATTCTCATCACATGATTACTAGAGGGAAAAGTGGGTGTACACCCCTAAATTTGTCTGGTATTCTATTTCATCATTCTTTCTTT
ACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTCTCCCGATCCTCACGCAGTGAATCTGCTGGCAACGATGGAATTCAATGCAATCTAGTGGTAAATCCGGGTAACAAGATCTCTACCGTGAAGTTAACT
GATGATAATTTTCTTTCGTGGAAATTTCAAGATCTCACTGCCCTAGAAGGATCTGAGTTTGAGTCGATGATTTCTGTTATTTCTACGAAATCTGGTCCTCAAACA
GTACAAGATGTCATGGCTCTATTATTGACACAAGAAAATAGAATTGAAAGAAAGAAGAGTTTGATTAATTTTGATTGCACTATTCCTTCAGCCAATCTTACACAT
GCTGCTGCTATGGGCAAAGAGAATGATGCTCCTAGAAATAGCGCTCAGTTTGAGAATAACCATGGGGCAACTAATCGATTTCGAGAGTTCAAAGACCTCCTTCCT
CTGGTTCTAGTTCTTATTCTCCTCAGTACCAAACGGCCAATTTCTCCTCAAATGTCTGCACTGCTTACTACTCTACATTTGAATCATGATACCAACTGGTATCCT
GATTTGGGTGCAACTAATCACCTCACTCATAATTTCAACAACTTGGTTGTTGTATCCCAAACTTTGTCCTCCTCTCCCTTATCCATTTCTGTTCGGTCCTCATCT
CTTATACCTGCATCTGCACTACTTGCGTCTGCTTCTTTGCCTGTAGCTACTGCTGGTTGTTTAAATTCTGCACCTATTAATACCGTGGTTGCTGCTCCTATCACG
ATTCCTAATACTATTGTATCTCTCAATGATGTACCAGCTGTTGTACCTCATGATAATGTGTCTGCTCCTACAATTGATGGGTCACAATCCATACTTCCTACTGTT
GTACATGGCGTACCGGTTTTATCTTATGGTTCCTTGGATGTATCTCAATCTGATGGTTCTTCCGCTGGTACTTCATTACCTGCATCTTCTTCTTCTGAGCCGTTG
ATCTCTACCCCTCTTATACGTAATTCTCATCACATGATTACTAGAGGGAAAAGTGGGTGTACACCCCTAAATTTGTCTGGTATTCTATTTCATCATTCTTTCTTT
ACTTAA
Protein sequenceShow/hide protein sequence
MVLSRSSRSESAGNDGIQCNLVVNPGNKISTVKLTDDNFLSWKFQDLTALEGSEFESMISVISTKSGPQTVQDVMALLLTQENRIERKKSLINFDCTIPSANLTH
AAAMGKENDAPRNSAQFENNHGATNRFREFKDLLPLVLVLILLSTKRPISPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVVSQTLSSSPLSISVRSSS
LIPASALLASASLPVATAGCLNSAPINTVVAAPITIPNTIVSLNDVPAVVPHDNVSAPTIDGSQSILPTVVHGVPVLSYGSLDVSQSDGSSAGTSLPASSSSEPL
ISTPLIRNSHHMITRGKSGCTPLNLSGILFHHSFFT