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Moc06g12170 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g12170
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr6:9301447..9304444
RNA-Seq ExpressionMoc06g12170
SyntenyMoc06g12170
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-4969.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-4969.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-5070.13Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V P  + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-4969.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-4969.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase1.5e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

A0A5A7UXR6 Reverse transcriptase9.7e-5069.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

A0A5A7UXR6 Reverse transcriptase1.5e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

A0A5A7UXR6 Reverse transcriptase9.7e-5069.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

A0A5A7V577 Reverse transcriptase1.1e-5070.13Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V P  + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

A0A5A7V577 Reverse transcriptase1.5e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

A0A5A7V577 Reverse transcriptase9.7e-5069.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

A0A5D3C4R1 Reverse transcriptase1.5e-1859.52Show/hide
Query:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK
        MDDFDVVLGM+FLLE +VI MPLA+CLV+T   P++V T ++Q  G+KMIS +QLK+GL+ DEPTFMAI +   E+S E +P++
Subjt:  MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRK

A0A5D3C4R1 Reverse transcriptase9.7e-5069.48Show/hide
Query:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV
        K+PQA NFTKEWRQ+ D+ARAYLEK SK MKKWADKKR+PLEF AGDQVLIKL   Q+RF G KDQRLVRKYE PV V+KKVG TSYRV L +WMKI+ V
Subjt:  KSPQAYNFTKEWRQSTDVARAYLEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLV

Query:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV
        IHVSNLK YH DT D  RN V    + L+ K +K+VEEILAER RR  RP R +
Subjt:  IHVSNLKSYHPDTIDPTRNEVIPLAVTLNNKIEKEVEEILAERTRRVGRPRRDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACTTTGATGTCGTGCTTGGAATGAAATTCCTTCTAGAGCAGAAAGTCATCTCCATGCCCTTGGCAGAGTGTCTAGTTGTTACTGAATCTGATCCTACC
ATTGTTCCAACGATTATAAAACAACAAAGTGGGGTTAAGATGATATCAACTCTACAGCTGAAGAGGGGCCTTGCTCACGACGAACCAACATTTATGGCCATCCTA
GTGATCGAAGAAGAGAGTAGTAAAGAAGTGATTCCCAGAAAGAGCCCCCAAGCTTACAACTTCACCAAAGAATGGCGACAATCCACGGATGTTGCCCGAGCGTAC
CTTGAAAAGACGTCTAAGCACATGAAGAAGTGGGCCGACAAGAAGCGCAAACCGTTAGAATTCCATGCAGGAGATCAAGTGCTCATTAAATTATGTCAAGGACAG
CTCCGATTCTTGGGTAACAAAGATCAACGCCTTGTACGAAAGTACGAAAGACCAGTCCACGTTATTAAGAAGGTCGGGAAGACGTCATACAGGGTCCAATTATCC
TCATGGATGAAAATTCACCTAGTGATCCATGTGAGCAATTTGAAATCTTATCACCCAGACACCATCGACCCCACACGTAACGAAGTTATTCCACTAGCGGTCACC
TTGAACAACAAGATAGAAAAAGAAGTTGAAGAAATCCTAGCTGAAAGAACTCGCCGAGTCGGACGACCGAGAAGGGACGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGACTTTGATGTCGTGCTTGGAATGAAATTCCTTCTAGAGCAGAAAGTCATCTCCATGCCCTTGGCAGAGTGTCTAGTTGTTACTGAATCTGATCCTACC
ATTGTTCCAACGATTATAAAACAACAAAGTGGGGTTAAGATGATATCAACTCTACAGCTGAAGAGGGGCCTTGCTCACGACGAACCAACATTTATGGCCATCCTA
GTGATCGAAGAAGAGAGTAGTAAAGAAGTGATTCCCAGAAAGAGCCCCCAAGCTTACAACTTCACCAAAGAATGGCGACAATCCACGGATGTTGCCCGAGCGTAC
CTTGAAAAGACGTCTAAGCACATGAAGAAGTGGGCCGACAAGAAGCGCAAACCGTTAGAATTCCATGCAGGAGATCAAGTGCTCATTAAATTATGTCAAGGACAG
CTCCGATTCTTGGGTAACAAAGATCAACGCCTTGTACGAAAGTACGAAAGACCAGTCCACGTTATTAAGAAGGTCGGGAAGACGTCATACAGGGTCCAATTATCC
TCATGGATGAAAATTCACCTAGTGATCCATGTGAGCAATTTGAAATCTTATCACCCAGACACCATCGACCCCACACGTAACGAAGTTATTCCACTAGCGGTCACC
TTGAACAACAAGATAGAAAAAGAAGTTGAAGAAATCCTAGCTGAAAGAACTCGCCGAGTCGGACGACCGAGAAGGGACGTATAG
Protein sequenceShow/hide protein sequence
MDDFDVVLGMKFLLEQKVISMPLAECLVVTESDPTIVPTIIKQQSGVKMISTLQLKRGLAHDEPTFMAILVIEEESSKEVIPRKSPQAYNFTKEWRQSTDVARAY
LEKTSKHMKKWADKKRKPLEFHAGDQVLIKLCQGQLRFLGNKDQRLVRKYERPVHVIKKVGKTSYRVQLSSWMKIHLVIHVSNLKSYHPDTIDPTRNEVIPLAVT
LNNKIEKEVEEILAERTRRVGRPRRDV