; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g12220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g12220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationchr6:9325979..9327238
RNA-Seq ExpressionMoc06g12220
SyntenyMoc06g12220
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABA97040.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]1.5e-3229.83Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKM--PSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWR
        VSD +     WD QK+ +  L  D + ILKI  S    ED   WH DR   +SV+S YKL I+L     S SSS Q     W  +WK  +P K+ +F WR
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKM--PSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWR

Query:  VFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHIN----------FFHSIQD--------------RLISLREE--
            C+ + EN + + LE S  C +CGN+ E   H+L +C  A  +WE +    SL +N          FF  I++              R+  +R E  
Subjt:  VFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHIN----------FFHSIQD--------------RLISLREE--

Query:  ---------ISIKNLNCFQARLSSVVDSQMAS---------------------RRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVT
                 +S + L  + + L  +     A                      RRV    W  P +GW+K NVD + +S + + GI  + R+S   ++ +
Subjt:  ---------ISIKNLNCFQARLSSVVDSQMAS---------------------RRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVT

Query:  MSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIELEKGTKR
             +    PL +ELLA  E + LALQ     + LES+CL A+ + +  K+
Subjt:  MSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIELEKGTKR

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]4.9e-3630.87Show/hide
Query:  ERLVSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIW
        E +V+D I     W   +L Q  ++ED+E ILKI +   + ED  +WH+D++  YSVKSGY+L +N   P+   S+      WK  W L +P K+ +F+W
Subjt:  ERLVSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIW

Query:  RVFTKCVPSLENL-RLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWEL----ILPHRSLHINFFHSIQD---RLISLREEI---------SIKNLNC
        R     +P+ ENL + + L+  + C  C  + ET  H L +CK A++IW+L    + P +  + +FF +IQ+   R  +   E+         S +N   
Subjt:  RVFTKCVPSLENL-RLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWEL----ILPHRSLHINFFHSIQD---RLISLREEI---------SIKNLNC

Query:  FQAR------LSSVVDSQM-ASRRVG--GNI------------WSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELL
        F+ +      L++  DS + A +RV   GN+            W  P    +K NVDAA ++   ++G+  I R++E +IL    K          AE  
Subjt:  FQAR------LSSVVDSQM-ASRRVG--GNI------------WSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELL

Query:  AIHECLKLALQLNYRSVQLESNCLQAIELEKGTK----RFGWILAPGLRISETPWKISPKFYSCTC
        AIH  L++A Q++  S+ +ES+C + +EL   TK       WIL+   R S+   ++   F   TC
Subjt:  AIHECLKLALQLNYRSVQLESNCLQAIELEKGTK----RFGWILAPGLRISETPWKISPKFYSCTC

XP_015384077.1 uncharacterized protein LOC107176301 [Citrus sinensis]1.5e-3231.19Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF
        V++ IT    W+  KL+    EED E +LKI +     ED  +WH+D++  Y+VKSGY++ + LK P+ +SS+      W +LW L +  KI +F+WR  
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF

Query:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHINFFHSIQDRLISLREEI-----SIKNLN--CFQARLSSVVDSQM
           +P+ ENL  +       C  C    ET  H+L +CK  K+IW  +L         F   Q R  S   +I       K ++     A+  +V D+  
Subjt:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHINFFHSIQDRLISLREEI-----SIKNLN--CFQARLSSVVDSQM

Query:  ASRRVGG-----------NIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNC
         +R  G            + W  PP    K NVDAA NS     G+  + R+SE   + T      +      AE  AI   LKLA +    ++ +ES+C
Subjt:  ASRRVGG-----------NIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNC

Query:  LQAIELEKGTK
        L+ +EL   TK
Subjt:  LQAIELEKGTK

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]9.6e-4032.11Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF
        V+ FIT    WD   +  +   ED + IL +PIS Y ++D W+WHYD+R  YSV+SGYKL ++LK  + S+S   RG  W S+WKL +P KI +FIWR  
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF

Query:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRS-LHINFFHSIQDRLISLREEISIKNLNC-------------------
         + +P+ +NL L+G+     C +CG++ E+  H+ F CKRA++IW  + P  + L      S  +   SL E++  K+LN                    
Subjt:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRS-LHINFFHSIQDRLISLREEISIKNLNC-------------------

Query:  -------------------FQARLSSVVDSQMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAI
                            QA++S+      ++ R     W       +K N DAAC   +   G   I R+S   ++   S        PL AE+  I
Subjt:  -------------------FQARLSSVVDSQMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAI

Query:  HECLKLALQLNYRSVQLESNCLQAIEL
         E LK A   N+  +++ES+ L AI+L
Subjt:  HECLKLALQLNYRSVQLESNCLQAIEL

XP_030483769.1 uncharacterized protein LOC115700339 [Cannabis sativa]1.6e-3431.74Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF
        VSD+IT  + W+   L+      DV+ IL IP+S+  ++D W+WH+D    YSV +GY    +L+    S+ +  +  WWK+ W   +P K+ +F WRV 
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF

Query:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHINF--FHSIQ--DRLISLREEISIKNLNCFQARLSSV---VDSQM
           +P  ++L  K +  S  C++C    ET  H+LF C  AKE+W+L         NF   H +Q  D LI + +   +   +   A   ++    +SQ 
Subjt:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHINF--FHSIQ--DRLISLREEISIKNLNCFQARLSSV---VDSQM

Query:  ASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAI
        A  +     W  PP   +K NVDAA +S+  +IGI  I RNS  ++L  MSK    ++     E  A+   L  A +L+     +E++CL  +
Subjt:  ASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAI

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248744.6e-4032.11Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF
        V+ FIT    WD   +  +   ED + IL +PIS Y ++D W+WHYD+R  YSV+SGYKL ++LK  + S+S   RG  W S+WKL +P KI +FIWR  
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF

Query:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRS-LHINFFHSIQDRLISLREEISIKNLNC-------------------
         + +P+ +NL L+G+     C +CG++ E+  H+ F CKRA++IW  + P  + L      S  +   SL E++  K+LN                    
Subjt:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRS-LHINFFHSIQDRLISLREEISIKNLNC-------------------

Query:  -------------------FQARLSSVVDSQMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAI
                            QA++S+      ++ R     W       +K N DAAC   +   G   I R+S   ++   S        PL AE+  I
Subjt:  -------------------FQARLSSVVDSQMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAI

Query:  HECLKLALQLNYRSVQLESNCLQAIEL
         E LK A   N+  +++ES+ L AI+L
Subjt:  HECLKLALQLNYRSVQLESNCLQAIEL

A0A803NN93 Uncharacterized protein1.2e-3229.5Show/hide
Query:  LVSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRV
        +V+D+I+    WD  KL       DVE ILKIP+S     D WVWHY   E Y+V SGY L  ++     SS +     WWK  W L +P K+ +F WRV
Subjt:  LVSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRV

Query:  FTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIW------------------ELILPHRSLHIN-----------FFHSIQDRLISLR
            +PS  NL  + +  S  C++C N  E+  H+LF CK AK +W                  + ++    LH             F  S ++ +I  +
Subjt:  FTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIW------------------ELILPHRSLHIN-----------FFHSIQDRLISLR

Query:  EE-------ISIKNLNCFQARLSSVVDS--QMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAI
        +         S K   C   + S++  S  Q+         W+ P  G +K NVDAA  S+  ++G   + R+S   +L   S   + ++     E  A+
Subjt:  EE-------ISIKNLNCFQARLSSVVDS--QMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAI

Query:  HECLKLALQLNYRSVQLESNCL
           L+ A QLNY+   +E++ L
Subjt:  HECLKLALQLNYRSVQLESNCL

A0A803PFL5 Uncharacterized protein5.5e-3329.86Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF
        VS +I  +  W+  +L Q   + D++ IL IP+S+Y+  D  +WH++    YSVKS + L  ++      SS+     WWK  WKL++PPK+ +F W+V 
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF

Query:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWE----LILPHRSLHINFFHSIQDRLISLREEISIKNLNCFQARLSSVVDSQMASR
           +P    L  + +  S  C  C +  E+  H+LF CK AK +W+     I  H ++     H+ Q RL + + + +  N+   Q+ +S+  D+ +  +
Subjt:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWE----LILPHRSLHINFFHSIQDRLISLREEISIKNLNCFQARLSSVVDSQMASR

Query:  RVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQ
             +W  PP+  +K NVDAA NS T  +GI  + RN + EI+  +SK     +     E   +   L  A Q       +E++ L+
Subjt:  RVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQ

A0A803PXR5 Uncharacterized protein1.7e-3429.31Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF
        V+  IT S+ W+ + L+Q   + D++ IL IP+S Y  ED+ +WHY     Y+VKSGY+   + +  +   S+    DWW++ W LK+P K+ +F WR F
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF

Query:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWEL--ILPHRSLHINFFHSIQD----------------------------------
           +P+   L  + +     C +C  +PET  H+L  CKR K++W    +LP   LH++   S+QD                                  
Subjt:  TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWEL--ILPHRSLHINFFHSIQD----------------------------------

Query:  ---RLISLREEISIKNLNCF---QARLSSVVDSQMASRRVGGNI-------------WSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSK
           +L+ +  + ++K L  +   QAR SS   +Q        NI             W+ PP G +K N DAA N ++  IG+  I RNS  +I+  MS 
Subjt:  ---RLISLREEISIKNLNCF---QARLSSVVDSQMASRRVGGNI-------------WSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSK

Query:  GFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIE-LEKGT
               P   E +A+   LK  LQL      +E++ L  ++ L+K T
Subjt:  GFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIE-LEKGT

Q2QUC2 Retrotransposon protein, putative, unclassified7.2e-3329.83Show/hide
Query:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKM--PSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWR
        VSD +     WD QK+ +  L  D + ILKI  S    ED   WH DR   +SV+S YKL I+L     S SSS Q     W  +WK  +P K+ +F WR
Subjt:  VSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKM--PSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWR

Query:  VFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHIN----------FFHSIQD--------------RLISLREE--
            C+ + EN + + LE S  C +CGN+ E   H+L +C  A  +WE +    SL +N          FF  I++              R+  +R E  
Subjt:  VFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHIN----------FFHSIQD--------------RLISLREE--

Query:  ---------ISIKNLNCFQARLSSVVDSQMAS---------------------RRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVT
                 +S + L  + + L  +     A                      RRV    W  P +GW+K NVD + +S + + GI  + R+S   ++ +
Subjt:  ---------ISIKNLNCFQARLSSVVDSQMAS---------------------RRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVT

Query:  MSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIELEKGTKR
             +    PL +ELLA  E + LALQ     + LES+CL A+ + +  K+
Subjt:  MSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIELEKGTKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein5.5e-0921.01Show/hide
Query:  KSLWKLKIPPKIIMFIWRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIW---ELILPHRSLHINFFHSIQDRLISLREEISI--
        +++WKL + PKI  F+WR  T  + +   LR + ++    C  C  + ET  H +F C   + +W    +I+ ++    + F    +RLI L +  +   
Subjt:  KSLWKLKIPPKIIMFIWRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIW---ELILPHRSLHINFFHSIQDRLISLREEISI--

Query:  ----------------KNLNCFQARLSS----------------------------VVDSQMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTI
                        +N+  FQ +  S                            V  + + + R   + W+ PP GWVK N D+     +P       
Subjt:  ----------------KNLNCFQARLSS----------------------------VVDSQMASRRVGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTI

Query:  CRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIEL
         R     I++  +         L AE L     L++      R V  ES+    + L
Subjt:  CRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIEL

AT3G25270.1 Ribonuclease H-like superfamily protein3.1e-1223.88Show/hide
Query:  LWKLKIPPKIIMFIWRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELI-LPHRSLH-------------------------I
        +WKLK  PKI  F+W++ +  + + +NL+ + +     C  C  + ET+ H  F C  A+++W    +PH+ L                           
Subjt:  LWKLKIPPKIIMFIWRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELI-LPHRSLH-------------------------I

Query:  NFFHSIQDRLISLREEI-----SIKNLNCFQARLSSV------------VDSQMASRR-----VGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRN
        N    I  RL   R ++     SI   N  Q   + V            ++ Q+ S R     +    W  PP  W+K+N D A N  T       + R+
Subjt:  NFFHSIQDRLISLREEI-----SIKNLNCFQARLSSV------------VDSQMASRR-----VGGNIWSLPPLGWVKFNVDAACNSTTPRIGIRTICRN

Query:  SEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIELEKGTK----RFGWI
             + +         D L +E  A+   ++ A    YR V  E +  Q  EL    K    RF WI
Subjt:  SEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIELEKGTK----RFGWI

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-0432.31Show/hide
Query:  DWWKSLWKLKIPPKIIMFIWRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAK
        +W   +W LKI PKI + IW+     +P    L  + + +   C  C +  ET  H LF C  A+
Subjt:  DWWKSLWKLKIPPKIIMFIWRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAK

AT4G29090.1 Ribonuclease H-like superfamily protein3.3e-1422.69Show/hide
Query:  VSDFITLS-KLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKL---VINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFI
        VSD I  S + W    +     E + + I ++      I D + W Y     Y+VKSGY +   +IN +      S       ++ +WK +  PKI  F+
Subjt:  VSDFITLS-KLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKL---VINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFI

Query:  WRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIW---ELILP-----HRSLHINFFH----------------------------
        W+  +  +P    L  + L     C  C +  ET +H LF+C  A+  W    + +P       S+++N +                             
Subjt:  WRVFTKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIW---ELILP-----HRSLHINFFH----------------------------

Query:  ----SIQDRLISLREEISIKNLNCFQARLSSVVDSQMASRRVGGNI---WSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDP
              + R  + +E +     +  + R+ +  +S     +V  +    W  PP  WVK N DA  N    R GI  + RN + E+    ++        
Subjt:  ----SIQDRLISLREEISIKNLNCFQARLSSVVDSQMASRRVGGNI---WSLPPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDP

Query:  LTAELLAIHECLKLALQLNYRSVQLESNCLQAIEL
        L AEL A+   +    +  Y  V  ES+    IE+
Subjt:  LTAELLAIHECLKLALQLNYRSVQLESNCLQAIEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGAAAGACTAGTTTCAGATTTCATTACTCTGTCCAAGCTATGGGATACCCAAAAATTAAGGCAGACTATTCTAGAAGAGGATGTAGAGACTATTCTGAAA
ATTCCGATCAGTTGGTATGAGATTGAGGATATGTGGGTTTGGCATTATGATCGCAGAGAGGTATACTCAGTTAAAAGTGGCTATAAGTTGGTCATCAATTTGAAG
ATGCCCTCGTGCTCCTCTAGTAATCAAAGGAGGGGTGATTGGTGGAAGAGTTTGTGGAAGCTAAAGATTCCTCCCAAAATTATAATGTTCATTTGGCGAGTGTTT
ACAAAGTGTGTGCCTTCGTTGGAGAATCTAAGGTTGAAAGGCCTAGAAGTGAGTCTGGATTGTGCAATGTGTGGAAACAAACCAGAAACTACAGATCATTCTCTG
TTCCAATGTAAAAGAGCCAAAGAAATTTGGGAATTGATTTTACCTCATCGGAGCCTTCATATAAATTTCTTTCATTCAATTCAGGATAGGCTCATATCTCTTCGT
GAGGAGATATCTATAAAGAATTTGAACTGTTTTCAGGCACGTCTGTCAAGTGTGGTGGATTCCCAAATGGCCAGCAGAAGAGTTGGTGGTAATATCTGGTCTCTA
CCTCCCCTGGGTTGGGTTAAATTTAACGTGGATGCGGCGTGTAATTCGACGACTCCTCGTATTGGTATAAGAACTATTTGTCGGAACAGTGAAAGGGAAATTTTG
GTTACCATGTCCAAAGGATTCGATGTTCACTACGATCCCCTAACAGCGGAATTACTCGCCATCCATGAATGTTTGAAGCTCGCTCTCCAGTTAAATTATCGATCT
GTGCAGTTGGAGTCAAACTGTCTCCAAGCTATTGAGCTCGAAAAGGGGACAAAGCGATTTGGTTGGATCCTGGCACCTGGGTTGAGGATATCAGAAACTCCATGG
AAGATTTCACCCAAATTTTATTCTTGCACATGTGAAAAGAGAAGGCAATCAGATTGCTCACAAGCTCCCGTCGAATGCTGTCGCCTTTGTGGATTTATGCGTTTG
TTCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGAAAGACTAGTTTCAGATTTCATTACTCTGTCCAAGCTATGGGATACCCAAAAATTAAGGCAGACTATTCTAGAAGAGGATGTAGAGACTATTCTGAAA
ATTCCGATCAGTTGGTATGAGATTGAGGATATGTGGGTTTGGCATTATGATCGCAGAGAGGTATACTCAGTTAAAAGTGGCTATAAGTTGGTCATCAATTTGAAG
ATGCCCTCGTGCTCCTCTAGTAATCAAAGGAGGGGTGATTGGTGGAAGAGTTTGTGGAAGCTAAAGATTCCTCCCAAAATTATAATGTTCATTTGGCGAGTGTTT
ACAAAGTGTGTGCCTTCGTTGGAGAATCTAAGGTTGAAAGGCCTAGAAGTGAGTCTGGATTGTGCAATGTGTGGAAACAAACCAGAAACTACAGATCATTCTCTG
TTCCAATGTAAAAGAGCCAAAGAAATTTGGGAATTGATTTTACCTCATCGGAGCCTTCATATAAATTTCTTTCATTCAATTCAGGATAGGCTCATATCTCTTCGT
GAGGAGATATCTATAAAGAATTTGAACTGTTTTCAGGCACGTCTGTCAAGTGTGGTGGATTCCCAAATGGCCAGCAGAAGAGTTGGTGGTAATATCTGGTCTCTA
CCTCCCCTGGGTTGGGTTAAATTTAACGTGGATGCGGCGTGTAATTCGACGACTCCTCGTATTGGTATAAGAACTATTTGTCGGAACAGTGAAAGGGAAATTTTG
GTTACCATGTCCAAAGGATTCGATGTTCACTACGATCCCCTAACAGCGGAATTACTCGCCATCCATGAATGTTTGAAGCTCGCTCTCCAGTTAAATTATCGATCT
GTGCAGTTGGAGTCAAACTGTCTCCAAGCTATTGAGCTCGAAAAGGGGACAAAGCGATTTGGTTGGATCCTGGCACCTGGGTTGAGGATATCAGAAACTCCATGG
AAGATTTCACCCAAATTTTATTCTTGCACATGTGAAAAGAGAAGGCAATCAGATTGCTCACAAGCTCCCGTCGAATGCTGTCGCCTTTGTGGATTTATGCGTTTG
TTCTTCTAA
Protein sequenceShow/hide protein sequence
MGERLVSDFITLSKLWDTQKLRQTILEEDVETILKIPISWYEIEDMWVWHYDRREVYSVKSGYKLVINLKMPSCSSSNQRRGDWWKSLWKLKIPPKIIMFIWRVF
TKCVPSLENLRLKGLEVSLDCAMCGNKPETTDHSLFQCKRAKEIWELILPHRSLHINFFHSIQDRLISLREEISIKNLNCFQARLSSVVDSQMASRRVGGNIWSL
PPLGWVKFNVDAACNSTTPRIGIRTICRNSEREILVTMSKGFDVHYDPLTAELLAIHECLKLALQLNYRSVQLESNCLQAIELEKGTKRFGWILAPGLRISETPW
KISPKFYSCTCEKRRQSDCSQAPVECCRLCGFMRLFF