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Moc06g12340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g12340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr6:9429673..9432347
RNA-Seq ExpressionMoc06g12340
SyntenyMoc06g12340
Gene Ontology termsNA
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.1e-3037Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------
        ++KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  QA+ +QRGRGR     F SRGRG           
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------

Query:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI
                              FHH +          TTS HH +   N   PQ+          KD   Y+         N P  S+     K +  Q+
Subjt:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI

Query:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESC
        LA+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  +VC SC
Subjt:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESC

RVW82530.1 hypothetical protein CK203_046287 [Vitis vinifera]1.6e-2633.95Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRGF----------
        ++KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  Q + +QRGRGR     F SRGRGF          
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRGF----------

Query:  -----HHTKPTTSSHHQQQNNGYAPQ----------------------------------------SKD---YI---------NGPIQSTRDVDNKGEQG
             H+   +T +     NN + PQ                                         KD   Y+         N P  S+     K +  
Subjt:  -----HHTKPTTSSHHQQQNNGYAPQ----------------------------------------SKD---YI---------NGPIQSTRDVDNKGEQG

Query:  QILAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSV
        Q+LA+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  ++
Subjt:  QILAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSV

RVX04589.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.3e-2833.75Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------
        ++KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  QA+ +QRGRGR     F SRGRG           
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------

Query:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI
                              FHH +          TTS HH +   N   PQ+          KD   Y+         N P  S+     K +  Q+
Subjt:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI

Query:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESCPTKPYLNIRLCSFIILDIPTTVKIKFT
        LA+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  +  +        N + CS      P T + +  
Subjt:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESCPTKPYLNIRLCSFIILDIPTTVKIKFT

Query:  FLANLEGKKTIRKLSNE
        F  ++EG+ + R  +N+
Subjt:  FLANLEGKKTIRKLSNE

RVX10186.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.1e-2736.33Show/hide
Query:  KKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG------------
        +KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  QA+ +QRGRGR     F SRGRG            
Subjt:  KKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG------------

Query:  ---------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQIL
                             FHH +          TTS HH +   N   PQ+          KD   Y+         N P  S+     K +  Q+L
Subjt:  ---------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQIL

Query:  AKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENS
        A+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  +
Subjt:  AKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENS

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]2.7e-2669.15Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLS----QRGRGRFFSSRGRGFHHTK
        MKKPL+DL KVFHL RGLGIKYK+FRTAML+K PYP+YNQFVLALK++ Q L +EE+  S+  N+NQAF S     RGRGR FSSRGRGF+H+K
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLS----QRGRGRFFSSRGRGFHHTK

TrEMBL top hitse value%identityAlignment
A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE11.5e-3037Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------
        ++KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  QA+ +QRGRGR     F SRGRG           
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------

Query:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI
                              FHH +          TTS HH +   N   PQ+          KD   Y+         N P  S+     K +  Q+
Subjt:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI

Query:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESC
        LA+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  +VC SC
Subjt:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESC

A0A438HDK5 Uncharacterized protein7.7e-2733.95Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRGF----------
        ++KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  Q + +QRGRGR     F SRGRGF          
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRGF----------

Query:  -----HHTKPTTSSHHQQQNNGYAPQ----------------------------------------SKD---YI---------NGPIQSTRDVDNKGEQG
             H+   +T +     NN + PQ                                         KD   Y+         N P  S+     K +  
Subjt:  -----HHTKPTTSSHHQQQNNGYAPQ----------------------------------------SKD---YI---------NGPIQSTRDVDNKGEQG

Query:  QILAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSV
        Q+LA+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  ++
Subjt:  QILAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSV

A0A438J6K3 Retrovirus-related Pol polyprotein from transposon RE16.3e-2933.75Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------
        ++KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  QA+ +QRGRGR     F SRGRG           
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG-----------

Query:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI
                              FHH +          TTS HH +   N   PQ+          KD   Y+         N P  S+     K +  Q+
Subjt:  ----------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQI

Query:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESCPTKPYLNIRLCSFIILDIPTTVKIKFT
        LA+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  +  +        N + CS      P T + +  
Subjt:  LAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESCPTKPYLNIRLCSFIILDIPTTVKIKFT

Query:  FLANLEGKKTIRKLSNE
        F  ++EG+ + R  +N+
Subjt:  FLANLEGKKTIRKLSNE

A0A438JMJ0 Retrovirus-related Pol polyprotein from transposon RE15.3e-2836.33Show/hide
Query:  KKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG------------
        +KP+ DL+KVF L +GLG KY +FR AML+KPPYP+YNQFVLAL+ ++Q++M E +      N  QA+ +QRGRGR     F SRGRG            
Subjt:  KKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGR----FFSSRGRG------------

Query:  ---------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQIL
                             FHH +          TTS HH +   N   PQ+          KD   Y+         N P  S+     K +  Q+L
Subjt:  ---------------------FHHTK---------PTTSSHHQQQ-NNGYAPQS----------KD---YI---------NGPIQSTRDVDNKGEQGQIL

Query:  AKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENS
        A+  +KGGLYALE+    +   T    S+KA   +WH+RM H   +S+KLL +K  ++VSSW K  +
Subjt:  AKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENS

A0A6J1DMG5 uncharacterized protein LOC1110213791.3e-2669.15Show/hide
Query:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLS----QRGRGRFFSSRGRGFHHTK
        MKKPL+DL KVFHL RGLGIKYK+FRTAML+K PYP+YNQFVLALK++ Q L +EE+  S+  N+NQAF S     RGRGR FSSRGRGF+H+K
Subjt:  MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLS----QRGRGRFFSSRGRGFHHTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGCCCCTAGAGGATTTGGAGAAAGTTTTTCACCTAGTTAGAGGTCTTGGAATCAAATACAAGGAATTTCGTACTGCAATGTTGGCAAAACCACCGTATCCTAC
ATATAACCAGTTTGTACTTGCCTTGAAAAGTTATCAGCAACTTCTGATGGAGGAAGAAGACAGCATATCAGCCTTTCCTAACATCAATCAAGCTTTCCTGTCACAACGAG
GAAGGGGTAGATTTTTCTCTTCCAGAGGAAGAGGATTTCACCATACAAAACCAACCACTTCCTCACACCACCAGCAGCAAAATAATGGTTATGCACCACAATCCAAAGAT
TACATCAATGGACCAATTCAATCTACAAGGGACGTGGACAATAAAGGCGAACAGGGACAAATACTAGCCAAGAGATATGAAAAAGGTGGACTGTATGCTCTTGAAGATCC
ACCATTCACATCTCATGCCTTCACTGCTATTGCTTTCTCTAATAAAGCTCCTCATTTTATTTGGCACAAAAGAATGAGACATCGCAATGATAGATCTTTAAAGTTGTTAT
GTGAAAAGAGTCATGTTCAAGTATCTAGTTGGAAAAAGGAAAATTCTGTTTGTGAAAGTTGTCCAACTAAGCCATATTTAAACATAAGGCTTTGTTCATTTATTATCCTC
GATATTCCTACCACTGTCAAGATAAAGTTTACCTTTCTGGCCAATTTGGAAGGCAAGAAGACCATTCGAAAGCTTAGCAATGAGATTTTCAAGGCTCGAGATCGTGGACG
TTACTTTTGGGACGAACTATTGACCTACCGAATTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGCCCCTAGAGGATTTGGAGAAAGTTTTTCACCTAGTTAGAGGTCTTGGAATCAAATACAAGGAATTTCGTACTGCAATGTTGGCAAAACCACCGTATCCTAC
ATATAACCAGTTTGTACTTGCCTTGAAAAGTTATCAGCAACTTCTGATGGAGGAAGAAGACAGCATATCAGCCTTTCCTAACATCAATCAAGCTTTCCTGTCACAACGAG
GAAGGGGTAGATTTTTCTCTTCCAGAGGAAGAGGATTTCACCATACAAAACCAACCACTTCCTCACACCACCAGCAGCAAAATAATGGTTATGCACCACAATCCAAAGAT
TACATCAATGGACCAATTCAATCTACAAGGGACGTGGACAATAAAGGCGAACAGGGACAAATACTAGCCAAGAGATATGAAAAAGGTGGACTGTATGCTCTTGAAGATCC
ACCATTCACATCTCATGCCTTCACTGCTATTGCTTTCTCTAATAAAGCTCCTCATTTTATTTGGCACAAAAGAATGAGACATCGCAATGATAGATCTTTAAAGTTGTTAT
GTGAAAAGAGTCATGTTCAAGTATCTAGTTGGAAAAAGGAAAATTCTGTTTGTGAAAGTTGTCCAACTAAGCCATATTTAAACATAAGGCTTTGTTCATTTATTATCCTC
GATATTCCTACCACTGTCAAGATAAAGTTTACCTTTCTGGCCAATTTGGAAGGCAAGAAGACCATTCGAAAGCTTAGCAATGAGATTTTCAAGGCTCGAGATCGTGGACG
TTACTTTTGGGACGAACTATTGACCTACCGAATTCCTTGA
Protein sequenceShow/hide protein sequence
MKKPLEDLEKVFHLVRGLGIKYKEFRTAMLAKPPYPTYNQFVLALKSYQQLLMEEEDSISAFPNINQAFLSQRGRGRFFSSRGRGFHHTKPTTSSHHQQQNNGYAPQSKD
YINGPIQSTRDVDNKGEQGQILAKRYEKGGLYALEDPPFTSHAFTAIAFSNKAPHFIWHKRMRHRNDRSLKLLCEKSHVQVSSWKKENSVCESCPTKPYLNIRLCSFIIL
DIPTTVKIKFTFLANLEGKKTIRKLSNEIFKARDRGRYFWDELLTYRIP