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Moc06g12560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g12560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:9678507..9678857
RNA-Seq ExpressionMoc06g12560
SyntenyMoc06g12560
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS38896.1 hypothetical protein Acr_00g0060030 [Actinidia rufa]1.1e-2755.83Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEINGIVRPGTYVLV
        MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G LVLR+V     + + G L P WEGP+++  + RPGTY L 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEINGIVRPGTYVLV

Query:  DLKGDVLAHPWNAEHLKRYY
        DL G  L+HPWNAEHLK+YY
Subjt:  DLKGDVLAHPWNAEHLKRYY

XP_022156049.1 uncharacterized protein LOC111023017 [Momordica charantia]3.3e-2957.39Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP+ RVE+++  TN E  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G L L++V  HV AL+P WEGP+ +  +VRP  Y+L DL G 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAE L+ YY
Subjt:  VLAHPWNAEHLKRYY

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]6.8e-3568.57Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP++RVE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+ GIVRPGTY+L DL+G 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHP
        +L+HP
Subjt:  VLAHP

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]3.2e-3260Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP+ RVE+++   N E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L DL G 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAEHL+ YY
Subjt:  VLAHPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]4.4e-4271.55Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+ GIVRPGTY+L DL+  
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHPWNAEHLKRYYP
        VLAHPWNAEHLKRYYP
Subjt:  VLAHPWNAEHLKRYYP

TrEMBL top hitse value%identityAlignment
A0A6J1DP99 uncharacterized protein K02A2.6-like3.3e-3568.57Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP++RVE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+ GIVRPGTY+L DL+G 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHP
        +L+HP
Subjt:  VLAHP

A0A6J1DS38 uncharacterized protein LOC1110230171.6e-2957.39Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP+ RVE+++  TN E  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G L L++V  HV AL+P WEGP+ +  +VRP  Y+L DL G 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAE L+ YY
Subjt:  VLAHPWNAEHLKRYY

A0A6J1DWM2 Ribonuclease H1.5e-3260Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP+ RVE+++   N E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L DL G 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAEHL+ YY
Subjt:  VLAHPWNAEHLKRYY

A0A6J1DXL9 uncharacterized protein LOC1110254482.1e-4271.55Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD
        MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+ GIVRPGTY+L DL+  
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGD

Query:  VLAHPWNAEHLKRYYP
        VLAHPWNAEHLKRYYP
Subjt:  VLAHPWNAEHLKRYYP

A0A7J0DQA8 Ribonuclease H5.1e-2855.83Show/hide
Query:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEINGIVRPGTYVLV
        MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G LVLR+V     + + G L P WEGP+++  + RPGTY L 
Subjt:  MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEINGIVRPGTYVLV

Query:  DLKGDVLAHPWNAEHLKRYY
        DL G  L+HPWNAEHLK+YY
Subjt:  DLKGDVLAHPWNAEHLKRYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTGACAGAGTAGAGCATTACGAGCCTTCGACAAATGAGGAAGAGTTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGC
GGAATATCAGGGCAGGATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTG
ATCCGGCCTGGGAAGGCCCATTTGAGATCAATGGCATAGTCCGACCTGGGACGTACGTATTGGTCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACAC
CTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTGACAGAGTAGAGCATTACGAGCCTTCGACAAATGAGGAAGAGTTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGC
GGAATATCAGGGCAGGATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTG
ATCCGGCCTGGGAAGGCCCATTTGAGATCAATGGCATAGTCCGACCTGGGACGTACGTATTGGTCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACAC
CTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEH
LKRYYP