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Moc06g12690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g12690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:9825145..9825534
RNA-Seq ExpressionMoc06g12690
SyntenyMoc06g12690
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7115099.1 hypothetical protein RHSIM_RhsimUnG0064500 [Rhododendron simsii]1.1e-1242.86Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR
        V+  NE +SK++G+G+V L T++  +L+  DVR++P  R+NLIS  KL+DEGY+++F + +WKL +G  VV  G K + +Y+++
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR

KAF7121453.1 hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii]1.1e-1242.86Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR
        V+  NE +SK++G+G+V L T++  +L+  DVR++P  R+NLIS  KL+DEGY+++F + +WKL +G  VV  G K + +Y+++
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR

KAF7129225.1 hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]8.2e-1342.86Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR
        V+  NE +SK++G+G+V L T++  +L+  DVR++P+ R+NLIS  KL+DEGY+++F + +WKL +G  VV  G K + +Y+++
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR

KAF7129546.1 hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii]1.1e-1239.33Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVAR
        V+  NE +SK++G+G+V L T++  +L+  DVR++P  R+NLIS  KL+DEGY+++F + +WKL +G  +V  G K + +Y+++  +++
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVAR

KAF7130883.1 hypothetical protein RHSIM_Rhsim10G0164600 [Rhododendron simsii]2.8e-1341.11Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVARR
        V+  NE +SK++G+G+V L T++  +L+  DVR++P  R+NLIS  KL+DEGY+++F + +WKL +G  VV  G K + +Y+++  +++R
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVARR

TrEMBL top hitse value%identityAlignment
A0A151QNH6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1238.68Show/hide
Query:  MVKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR-------FGVARRLE
        MVK  N   SK++GIGE+ L T++  +L+  +VR++P  R+NLISV KL++ G  ++F+ +RWKL RG  +V  G KE  +Y ++         VA+   
Subjt:  MVKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLR-------FGVARRLE

Query:  RQVMHR
        +++ HR
Subjt:  RQVMHR

A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1239.33Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVAR
        V+  NE +SK++G+G++ L T++  +L+  DVR++P  R+NLIS  KL+DEGY + F++ +WKL +G  VV  G K   +Y ++  + +
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVAR

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1239.33Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVAR
        V+  NE +SK++G+G++ L T++  +L+  DVR++P  R+NLIS  KL+DEGY + F++ +WKL +G  VV  G K   +Y ++  + +
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVAR

A0A438HJE1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-1237.38Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVARRLERQVMHRVA
        V+  NE +SK++ +G++ L T++  +L+  DVR++P  R+NLIS  KL+DEGY + F++ +WKL +G  VV  G K   +Y+    V  ++ + VM+ + 
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVARRLERQVMHRVA

Query:  NSLRGDL
        N    DL
Subjt:  NSLRGDL

A0A438I3N7 Retrovirus-related Pol polyprotein from transposon TNT 1-948.8e-1333.08Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRF----GVARRLERQVM
        V+  NE +SK++G+G++ L T++  +L+  DVR++P  R+NLIS  KL+DEGY + F++ +WKL +G  VV  G+K   +Y ++     GV   LE    
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRF----GVARRLERQVM

Query:  HRVANSLRGDLKELAALTIMTNKKNMSSVQ
          + +   G + E   L +++ K+ ++ ++
Subjt:  HRVANSLRGDLKELAALTIMTNKKNMSSVQ

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.9e-1140.74Show/hide
Query:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVY
        VK  N   SK+ GIG++ ++T+    LV  DVR++P  RMNLIS   L+ +GY S FA  +W+L +G  V+  G     +Y
Subjt:  VKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGACGTGGAATGAGAGACTCTCCAAGGTCATAGGAATTGGGGAGGTGCATCTGAGGACTGACAGCGAGATCGAGTTAGTTTTTCATGATGTCAGATATATACC
CAGTTTCAGGATGAATTTGATATCGGTGGAAAAGCTGAATGATGAAGGCTACAGAAGTGAGTTTGCAGAGAATAGGTGGAAACTCATGAGAGGATATGAGGTAGTGGTTG
TTGGCCACAAAGAAGCTTTAGTGTATGTGTTGAGGTTTGGCGTTGCCAGAAGATTAGAGAGACAAGTTATGCATAGGGTTGCAAACAGTTTAAGGGGGGACTTGAAAGAA
CTAGCAGCATTGACAATCATGACAAATAAGAAAAATATGTCATCAGTTCAAGTAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGACGTGGAATGAGAGACTCTCCAAGGTCATAGGAATTGGGGAGGTGCATCTGAGGACTGACAGCGAGATCGAGTTAGTTTTTCATGATGTCAGATATATACC
CAGTTTCAGGATGAATTTGATATCGGTGGAAAAGCTGAATGATGAAGGCTACAGAAGTGAGTTTGCAGAGAATAGGTGGAAACTCATGAGAGGATATGAGGTAGTGGTTG
TTGGCCACAAAGAAGCTTTAGTGTATGTGTTGAGGTTTGGCGTTGCCAGAAGATTAGAGAGACAAGTTATGCATAGGGTTGCAAACAGTTTAAGGGGGGACTTGAAAGAA
CTAGCAGCATTGACAATCATGACAAATAAGAAAAATATGTCATCAGTTCAAGTAAAATAG
Protein sequenceShow/hide protein sequence
MVKTWNERLSKVIGIGEVHLRTDSEIELVFHDVRYIPSFRMNLISVEKLNDEGYRSEFAENRWKLMRGYEVVVVGHKEALVYVLRFGVARRLERQVMHRVANSLRGDLKE
LAALTIMTNKKNMSSVQVK