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Moc06g12810 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g12810
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:9903320..9907078
RNA-Seq ExpressionMoc06g12810
SyntenyMoc06g12810
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159413.1 uncharacterized protein LOC111025834 [Momordica charantia]5.2e-8869.53Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MITN IRAQYGG S+SSLLYSKPYTKRIN +RMP GYQPPKF+HFDGKGNP   +                                 T  + E + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYST+R VSMMELTNS++RKGEPVV+YIN+WRALSL+CKDRLTELSAVELCTQGMHWELLYILQ IKPRTFEELATRAHDMELSIA+RGSK
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDLKKEIKSVERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        D LV DL+KE KSVE+T NE FGVNT SPKL S+IKGKR  KQ GN K  LSLKER
Subjt:  DFLVPDLKKEIKSVERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-7761.22Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MITN IRAQYGGPS++S +YSKPYTKRI+ +RMP GYQPPKF+ FDGKGNP   +                                 T  + E + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYSTRR VSMMELTN+K+RKGEPV+ YIN+WRALSL+CKDRLTELSAVE+CTQGMHW LLYILQGIKPRTFEELATRAHDMELSIASRG+K
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        DFLVP++KK+ K        V+ T  ES  VNTT  K S   + +   K  G+E+RRL+LKER
Subjt:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.1e-7760.84Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MIT+ IRAQYGGPS++S +YSKPYTKRI+ +RMP GYQPPKF+ FDGKGNP   +                                 T  + E + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYSTRR VSMMELTN+K+RKGEPV+ YIN+WRALSL+CKDRLTELSAVE+CTQGMHW LLYILQGIKPRTFEELATRAHDMELSIASRG+K
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        DFLVP++KK+ K        V+ T  ES  VNTT  K S   + +   K  G+E+RRL+LKER
Subjt:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]8.3e-7861.22Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MIT+ IRAQYGGPS++S +YSKPYTKRI+ +RMP GYQPPKF+ FDGKGNP   +                                 T  + E + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYSTRR VSMMELTN+K+RKGEPV+ YIN+WRALSL+CKDRLTELSAVE+CTQGMHW LLYILQGIKPRTFEELATRAHDMELSIASRG+K
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        DFLVP++KK+ K        V+ TL ES  VNTT  K S   + +   K  G+E+RRL+LKER
Subjt:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.1e-7761.22Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MITN IRAQYGGPS++S +YSKPYTKRI+ +RMP GYQPPKF+ FDGKGNP   +                                 T  + E + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYSTRR VSMMELTN+K+RKGEPV+ YIN+WRALSL+CKDRLTELSAVE+CTQGMHW LLYILQGIKPRTFEELATRAHDMELSIASRG+K
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        DFLVP++KK+ K        V+ T  ES  VNTT  K S   + +   K  G+E+RRL+LKER
Subjt:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H9.6e-7258.94Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MI N I+ QYGGP+++  LYSKPYTKRI+ MRMP GYQPPKF+ FDGKGNP   +                                 T  + E + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLER+FL+RFYSTRRIVSM+ELT +K+RKGEPV+ YIN+WRALSL+CKDRLTELSAVE+CTQGMHW LLYILQGIKPRTFEELATRAHDMELSIA+RG+ 
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDL---KKEIKSVERTL----NESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        D LVP++   KKE+KS ++ L     E+  V+TT  KL S+ K K   +Q   EKRR +LKER
Subjt:  DFLVPDL---KKEIKSVERTL----NESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

A0A5A7U8E4 Retrotransposon gag protein7.1e-7559.7Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MI N IRAQYGG  +++ +YSKPYTKRI+ +RMP GYQPPKF+ FD KGNP   +                                 T  + E + SW+
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYSTRR VSMMELTN+K+RKGEPV+ YIN+WRALSL+CKDRLTELSAVE+CTQGMHW LLYILQGIKPRTFEELATRAHDMELSIASRG+K
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDL---KKEIKSVER----TLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        DF VP++   KKE KS E+    ++ ES  VNTT  K S R +G+   K  G+E+RRL+LKER
Subjt:  DFLVPDL---KKEIKSVER----TLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

A0A5D3C0W6 Ty3-gypsy retrotransposon protein7.3e-7257.03Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MI N IRAQYGG  +++ +YSK YTKRI+ + MP GYQPPKF+ FDGKGNP   +                                 T+ +L+ + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYSTRR +SMMELTN+K+ KGEPV+ YIN+WRAL L+CKDRLT+LS VE+CTQGMHW LLYILQGIKPRTFEELATRAHDMELSIASRG+K
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        DF VP++KK+ K        V+ ++ ES  VNT   K S R +G+   K  G+EKRRL+LKER
Subjt:  DFLVPDLKKEIKS-------VERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

A0A5D3CD35 Ty3-gypsy retrotransposon protein1.9e-7559.09Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MI N IRAQYGGP +++ +YSKPYTKRI+ +RMP GYQPPKF+ FDGKGNP   +                                 T+ + E + +WE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL RFYS RR VSMMELTN+K++KGEPV+ YIN+WRALSL+CKDRLTELS+VE+CTQGMHWELLYILQGIKPRTFEE ATRAHDMELSIASRG+K
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDL---KKEIKSVER----TLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKERD
        DF VP++   KKE KSVE+    T+  S  VNTT  K S R +G+      G+E+RRL+LKER+
Subjt:  DFLVPDL---KKEIKSVER----TLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKERD

A0A6J1DYQ8 uncharacterized protein LOC1110258342.5e-8869.53Show/hide
Query:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE
        MITN IRAQYGG S+SSLLYSKPYTKRIN +RMP GYQPPKF+HFDGKGNP   +                                 T  + E + SWE
Subjt:  MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNIL--------------------------------LTSSKLERMLSWE

Query:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK
        QLE+EFL+RFYST+R VSMMELTNS++RKGEPVV+YIN+WRALSL+CKDRLTELSAVELCTQGMHWELLYILQ IKPRTFEELATRAHDMELSIA+RGSK
Subjt:  QLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRALSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSK

Query:  DFLVPDLKKEIKSVERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER
        D LV DL+KE KSVE+T NE FGVNT SPKL S+IKGKR  KQ GN K  LSLKER
Subjt:  DFLVPDLKKEIKSVERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLSLKER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACGAACATGATCAGAGCGCAATACGGCGGACCTTCTCGAAGCTCCCTCTTGTATTCTAAGCCATATACTAAGAGGATTAATTATATGAGAATGCCTACTGGATA
CCAACCTCCAAAATTCAAGCATTTCGATGGGAAGGGCAATCCAAATAATATATTGCTCACTTCGTCGAAACTTGAGAGAATGCTGAGTTGGGAACAGCTTGAAAGAGAAT
TCCTAAGTCGCTTCTACAGTACGAGGAGAATTGTTAGCATGATGGAGCTCACTAACTCCAAAGAAAGAAAAGGTGAACCGGTTGTCAAATATATCAACCAATGGAGAGCT
CTAAGTCTTGAGTGTAAAGATAGGCTTACTGAACTATCCGCTGTCGAATTATGCACTCAAGGTATGCATTGGGAACTTCTTTACATCCTTCAAGGTATAAAACCTCGCAC
CTTTGAAGAGTTAGCAACTCGTGCTCACGATATGGAGCTTAGCATTGCTAGTCGAGGAAGTAAGGATTTCTTAGTGCCGGACTTAAAGAAAGAAATCAAAAGTGTTGAAA
GAACTCTAAATGAATCTTTTGGTGTAAACACGACCTCTCCCAAATTGTCTTCAAGAATAAAAGGAAAGAGATTTGGGAAGCAACACGGAAATGAGAAAAGAAGACTAAGC
TTGAAAGAAAGGGACAACTTAACCAATCGAAAAGGTGTTAACCTACTCAGCAAAGTAGTCACTGTCGGGCAGATAAAGATGGACGTGAGGATTGCTAGTATAGGGCGTGA
CTACTGCTGGTATAGGAACACCTTAACCGATCGAAAAGGTGTTAACCTACTCAGCAAAGATGTCACGCTAAGGCGGATGGACATGAGCATTGCTAGTATAGGGCGTGACT
ACTGTTGGTATAGGAACGCCTTAACCGATCGAAAACGTGTTAACCCACTTAACAAAGATGTCACGCTAAGGCAGATGGACGTCAGCATTGCTAGTATAAGGGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCACGAACATGATCAGAGCGCAATACGGCGGACCTTCTCGAAGCTCCCTCTTGTATTCTAAGCCATATACTAAGAGGATTAATTATATGAGAATGCCTACTGGATA
CCAACCTCCAAAATTCAAGCATTTCGATGGGAAGGGCAATCCAAATAATATATTGCTCACTTCGTCGAAACTTGAGAGAATGCTGAGTTGGGAACAGCTTGAAAGAGAAT
TCCTAAGTCGCTTCTACAGTACGAGGAGAATTGTTAGCATGATGGAGCTCACTAACTCCAAAGAAAGAAAAGGTGAACCGGTTGTCAAATATATCAACCAATGGAGAGCT
CTAAGTCTTGAGTGTAAAGATAGGCTTACTGAACTATCCGCTGTCGAATTATGCACTCAAGGTATGCATTGGGAACTTCTTTACATCCTTCAAGGTATAAAACCTCGCAC
CTTTGAAGAGTTAGCAACTCGTGCTCACGATATGGAGCTTAGCATTGCTAGTCGAGGAAGTAAGGATTTCTTAGTGCCGGACTTAAAGAAAGAAATCAAAAGTGTTGAAA
GAACTCTAAATGAATCTTTTGGTGTAAACACGACCTCTCCCAAATTGTCTTCAAGAATAAAAGGAAAGAGATTTGGGAAGCAACACGGAAATGAGAAAAGAAGACTAAGC
TTGAAAGAAAGGGACAACTTAACCAATCGAAAAGGTGTTAACCTACTCAGCAAAGTAGTCACTGTCGGGCAGATAAAGATGGACGTGAGGATTGCTAGTATAGGGCGTGA
CTACTGCTGGTATAGGAACACCTTAACCGATCGAAAAGGTGTTAACCTACTCAGCAAAGATGTCACGCTAAGGCGGATGGACATGAGCATTGCTAGTATAGGGCGTGACT
ACTGTTGGTATAGGAACGCCTTAACCGATCGAAAACGTGTTAACCCACTTAACAAAGATGTCACGCTAAGGCAGATGGACGTCAGCATTGCTAGTATAAGGGCGTGA
Protein sequenceShow/hide protein sequence
MITNMIRAQYGGPSRSSLLYSKPYTKRINYMRMPTGYQPPKFKHFDGKGNPNNILLTSSKLERMLSWEQLEREFLSRFYSTRRIVSMMELTNSKERKGEPVVKYINQWRA
LSLECKDRLTELSAVELCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIASRGSKDFLVPDLKKEIKSVERTLNESFGVNTTSPKLSSRIKGKRFGKQHGNEKRRLS
LKERDNLTNRKGVNLLSKVVTVGQIKMDVRIASIGRDYCWYRNTLTDRKGVNLLSKDVTLRRMDMSIASIGRDYCWYRNALTDRKRVNPLNKDVTLRQMDVSIASIRA