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Moc06g14080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g14080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr6:10994270..10994896
RNA-Seq ExpressionMoc06g14080
SyntenyMoc06g14080
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141766.1 uncharacterized protein LOC111012047 [Momordica charantia]4.8e-2338.46Show/hide
Query:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSR--R
        FIDRW  W    +  EL+L  II W  WNDRNQ  +   ++D   + DWI NY  EL    +     QK L P    W+PP +G VK+N D A D R  R
Subjt:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSR--R

Query:  SCVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHS
          VGV++RDDR+ ++AAL+       P LAEI AIRE +RLAER     + V  +       +    + +  +  W++D  S
Subjt:  SCVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHS

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]2.4e-2240.12Show/hide
Query:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRG-VVKINTDGACDSRRS
        +++RW  W+   S S L L  I  W +WND N +++K  + +  +                       K  +PR NAW+PPP G VVK+NTD A  +  S
Subjt:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRG-VVKINTDGACDSRRS

Query:  CVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLI
         VGV++RD  + +VAA++D      P L EI AIREGLRLA RL + RV+VESDS   ++LI
Subjt:  CVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.6e-2134Show/hide
Query:  IDFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIE--ELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDS
        I F++ W +   +    +L L +I  W IWNDRN ++H   +S    K +W+  +++      M     R Q    P    W+P     +K+NTD AC  
Subjt:  IDFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIE--ELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDS

Query:  RRSCVGVVIRDDRSGVVAALVDVLP-GTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR
          +  G +IRD    +VAA    +P    P LAEI  I EGL+ A     + + VESDS   I LI   + +RG+  NW+ +I +L   FA ISF H  R
Subjt:  RRSCVGVVIRDDRSGVVAALVDVLP-GTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]4.7e-3443.72Show/hide
Query:  SKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSRRSCVGVVIRDDRSGV
        S SEL LT I  W +WNDR+ +++K  + +  +KV+WI+ Y EE+++    G+   K  +PR N W+PP  GVVK+NTD A     S VGV++R+  + +
Subjt:  SKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSRRSCVGVVIRDDRSGV

Query:  VAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR
        V A+VD      P LA+I AIREGL LA RL + RV+VE+DS   ++LI +    +GE  +W+ DI + A  F  I F HVFR
Subjt:  VAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR

XP_023889265.1 uncharacterized protein LOC112001321 [Quercus suber]1.3e-2035.68Show/hide
Query:  DFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGAC-DSRR
        DF+D  + ++ + S  +L L  ++ W+IW +RNQ +H++  S  S   D     + E K              P   AWQ PP G  KINTDGA  D   
Subjt:  DFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGAC-DSRR

Query:  SCVGVVIRDDRSGVVAALVDVLPGT-DPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFRN
        SC GV IRD R  ++AAL  +LP +   ++ E  A+++G+ LA  L +S V+VESD+ ++I  I E  V  GE+ + + +I  +++SF+  SF H+ R+
Subjt:  SCVGVVIRDDRSGVVAALVDVLPGT-DPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFRN

TrEMBL top hitse value%identityAlignment
A0A6J1CK80 uncharacterized protein LOC1110120472.3e-2338.46Show/hide
Query:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSR--R
        FIDRW  W    +  EL+L  II W  WNDRNQ  +   ++D   + DWI NY  EL    +     QK L P    W+PP +G VK+N D A D R  R
Subjt:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSR--R

Query:  SCVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHS
          VGV++RDDR+ ++AAL+       P LAEI AIRE +RLAER     + V  +       +    + +  +  W++D  S
Subjt:  SCVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHS

A0A6J1DPU1 uncharacterized protein LOC1110224261.2e-2240.12Show/hide
Query:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRG-VVKINTDGACDSRRS
        +++RW  W+   S S L L  I  W +WND N +++K  + +  +                       K  +PR NAW+PPP G VVK+NTD A  +  S
Subjt:  FIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRG-VVKINTDGACDSRRS

Query:  CVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLI
         VGV++RD  + +VAA++D      P L EI AIREGLRLA RL + RV+VESDS   ++LI
Subjt:  CVGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLI

A0A6J1DX30 uncharacterized protein LOC1110248747.5e-2234Show/hide
Query:  IDFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIE--ELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDS
        I F++ W +   +    +L L +I  W IWNDRN ++H   +S    K +W+  +++      M     R Q    P    W+P     +K+NTD AC  
Subjt:  IDFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIE--ELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDS

Query:  RRSCVGVVIRDDRSGVVAALVDVLP-GTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR
          +  G +IRD    +VAA    +P    P LAEI  I EGL+ A     + + VESDS   I LI   + +RG+  NW+ +I +L   FA ISF H  R
Subjt:  RRSCVGVVIRDDRSGVVAALVDVLP-GTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR

A0A6J1DZK3 uncharacterized protein LOC1110249682.3e-3443.72Show/hide
Query:  SKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSRRSCVGVVIRDDRSGV
        S SEL LT I  W +WNDR+ +++K  + +  +KV+WI+ Y EE+++    G+   K  +PR N W+PP  GVVK+NTD A     S VGV++R+  + +
Subjt:  SKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSRRSCVGVVIRDDRSGV

Query:  VAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR
        V A+VD      P LA+I AIREGL LA RL + RV+VE+DS   ++LI +    +GE  +W+ DI + A  F  I F HVFR
Subjt:  VAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR

A0A7N2MZD8 RNase H domain-containing protein5.6e-1731.84Show/hide
Query:  DFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACD---S
        DF D  + +        L     I W+IW++RN+++H        +  D+  N IEE    E+    D   L P  ++W  P  G  K+N DGAC    S
Subjt:  DFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACD---S

Query:  RRSCVGVVIRDDRSGVVAALVDVLPGTDP-QLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR
          S VGV+IRD+  GV+ AL   LP   P +  E  A+ +G+ LA+ L L+ V+ +SD+ +VI  I +     G + +++  I +  + F    F HV R
Subjt:  RRSCVGVVIRDDRSGVVAALVDVLPGTDP-QLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR

Query:  N
        +
Subjt:  N

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein1.8e-0424.46Show/hide
Query:  IYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGAC------DSRRSCVG-----VVIRDDRSG
        I W IW  RNQ++ +N  S  SV ++ +   +++    +   +      +P+     P P     +  D  C        + S  G              
Subjt:  IYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGAC------DSRRSCVG-----VVIRDDRSG

Query:  VVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR
        +            P  AE  AI+  +  A +L  S +LV SDSK+++D +  + VS  E+   + +I S+ N F SISF  + R
Subjt:  VVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGGGACGGTCCGTCTACCATTGATTTTATTGATCGTTGGATGGCCTGGGTAGGTGAGTTCTCCAAATCTGAACTCATTCTTACAAGTATTATTTACTGGACAAT
CTGGAATGATAGAAATCAAGTATTACATAAGAATCATTTATCGGATTGTTCAGTTAAGGTTGATTGGATTATGAACTATATTGAGGAACTAAAATTGATGGAGCAGGGAG
GGGTGAGAGATCAGAAGGGGTTGGTACCTCGGAAGAATGCCTGGCAACCTCCCCCCCGTGGGGTGGTGAAAATAAACACCGATGGTGCCTGTGATTCGCGTCGCTCTTGT
GTAGGAGTTGTTATTAGAGACGATCGATCTGGGGTTGTTGCAGCTTTGGTAGATGTCCTCCCAGGGACGGATCCTCAACTCGCTGAAATTGCTGCAATTCGTGAAGGTTT
GAGGCTTGCAGAAAGACTACGGCTTTCTCGAGTGTTGGTGGAGTCTGATTCGAAGAATGTGATCGACTTAATTTGTGAAACTTTGGTCTCTAGGGGTGAGGTGGCAAATT
GGATAGCTGATATTCATTCCCTGGCGAACTCTTTTGCTTCGATTTCTTTTCACCATGTTTTTAGGAATCAAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGGGACGGTCCGTCTACCATTGATTTTATTGATCGTTGGATGGCCTGGGTAGGTGAGTTCTCCAAATCTGAACTCATTCTTACAAGTATTATTTACTGGACAAT
CTGGAATGATAGAAATCAAGTATTACATAAGAATCATTTATCGGATTGTTCAGTTAAGGTTGATTGGATTATGAACTATATTGAGGAACTAAAATTGATGGAGCAGGGAG
GGGTGAGAGATCAGAAGGGGTTGGTACCTCGGAAGAATGCCTGGCAACCTCCCCCCCGTGGGGTGGTGAAAATAAACACCGATGGTGCCTGTGATTCGCGTCGCTCTTGT
GTAGGAGTTGTTATTAGAGACGATCGATCTGGGGTTGTTGCAGCTTTGGTAGATGTCCTCCCAGGGACGGATCCTCAACTCGCTGAAATTGCTGCAATTCGTGAAGGTTT
GAGGCTTGCAGAAAGACTACGGCTTTCTCGAGTGTTGGTGGAGTCTGATTCGAAGAATGTGATCGACTTAATTTGTGAAACTTTGGTCTCTAGGGGTGAGGTGGCAAATT
GGATAGCTGATATTCATTCCCTGGCGAACTCTTTTGCTTCGATTTCTTTTCACCATGTTTTTAGGAATCAAACCTAG
Protein sequenceShow/hide protein sequence
MLRDGPSTIDFIDRWMAWVGEFSKSELILTSIIYWTIWNDRNQVLHKNHLSDCSVKVDWIMNYIEELKLMEQGGVRDQKGLVPRKNAWQPPPRGVVKINTDGACDSRRSC
VGVVIRDDRSGVVAALVDVLPGTDPQLAEIAAIREGLRLAERLRLSRVLVESDSKNVIDLICETLVSRGEVANWIADIHSLANSFASISFHHVFRNQT