CuGenDBv2

Gene ID	Moc06g14110
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Genome location	chr6:11006820..11007257
RNA-Seq Expression	Moc06g14110
Synteny	Moc06g14110
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

VFQ60264.1 unnamed protein product [Cuscuta campestris]

1.5e-18

42.31

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAKE+++AL   +E  SA  K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

VFQ71379.1 unnamed protein product [Cuscuta campestris]

8.6e-19

43.08

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K +N  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK +L AL   +E  S   K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E+KA+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

VFQ73787.1 unnamed protein product [Cuscuta campestris]

5.0e-19

42.31

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK ++ AL   +E  SA  K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  ILN+L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

VFQ82471.1 unnamed protein product [Cuscuta campestris]

1.9e-18

42.31

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK ++ AL   +E  SA  K+ L  +  N  M E TLV  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

VFQ92568.1 unnamed protein product [Cuscuta campestris]

2.5e-18

41.54

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK ++ AL   +E  SA  K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

TrEMBL top hits

e value

%identity

Alignment

A0A484K8X3 Uncharacterized protein

7.1e-19

42.31

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAKE+++AL   +E  SA  K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

A0A484L4X7 CCHC-type domain-containing protein

4.1e-19

43.08

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K +N  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK +L AL   +E  S   K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E+KA+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

A0A484LBI9 Uncharacterized protein

2.4e-19

42.31

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK ++ AL   +E  SA  K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  ILN+L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

A0A484M143 CCHC-type domain-containing protein

9.2e-19

42.31

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK ++ AL   +E  SA  K+ L  +  N  M E TLV  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

A0A484MX32 CCHC-type domain-containing protein

1.2e-18

41.54

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Query:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE
        MQ++DLL  K ++  LGD+P +M+D DW  +  +A++ I +SL+  V   + KE TAK ++ AL   +E  SA  K+ L  +  N  M+E T V  HI +
Subjt:  MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIE

Query:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD
        L  IL +L  +GIK D+E++A+ LL+SLPD
Subjt:  LTDILNKLEGMGIKIDEELKAIRLLTSLPD

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.2e-04

22.73

Show/hide

Query:  QVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIEL
        +++ LL  + + K +        D  W +    A + II  LS    +    ++TA+++L+ L   +E  S  +++ L  +  ++ +  E  + SH    
Subjt:  QVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIEL

Query:  TDILNKLEGMGIKIDEELKAIRLLTSLPDLGD----------DENRDVEFVRGQ
         +++++L   G KI+E  K   LL +LP   D          +EN  + FV+ +
Subjt:  TDILNKLEGMGIKIDEELKAIRLLTSLPDLGD----------DENRDVEFVRGQ

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-10

30.88

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Query:  QVKDLLTCKKINKTL---GDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHI
        +++DLL  + ++K L     +P  M  +DW ++ E+A + I + LS  V + +  E TA+ +   L+  + + +   K+ L  + + +HM E T   SH+
Subjt:  QVKDLLTCKKINKTL---GDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHI

Query:  IELTDILNKLEGMGIKIDEELKAIRLLTSLPDLGDD
             ++ +L  +G+KI+EE KAI LL SLP   D+
Subjt:  IELTDILNKLEGMGIKIDEELKAIRLLTSLPDLGDD

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGGTAAAGGATCTTCTTACGTGCAAGAAGATAAACAAGACTTTGGGAGATAGACCAACAAGGATGACTGACAAGGATTGGAATGAGATGTATGAGCAAGCTGTTGC
AAACATCATAATATCTTTGTCGATGGGTGTATGCAGTCTCGTGGCAAAAGAGATGACTGCGAAAGAATTGTTGCAAGCCTTGCAAGGCAGGCATGAGAATTCTTCTGCCA
ACACTAAAATACTTCTATGGACGAAGTATTTTAATATCCACATGGAGGAGGAAACCTTGGTGAATTCTCATATTATTGAGCTCACTGATATATTAAACAAACTGGAAGGG
ATGGGTATCAAAATCGATGAGGAGTTGAAGGCTATAAGGTTGCTGACATCTTTGCCTGACTTGGGGGACGATGAAAACCGCGATGTCGAATTTGTTAGAGGACAATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MQVKDLLTCKKINKTLGDRPTRMTDKDWNEMYEQAVANIIISLSMGVCSLVAKEMTAKELLQALQGRHENSSANTKILLWTKYFNIHMEEETLVNSHIIELTDILNKLEG
MGIKIDEELKAIRLLTSLPDLGDDENRDVEFVRGQ

Moc06g14110 (gene) of Bitter gourd (OHB3-1) v2 genome