; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g14330 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g14330
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:11190607..11191868
RNA-Seq ExpressionMoc06g14330
SyntenyMoc06g14330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN78192.1 hypothetical protein VITISV_036909 [Vitis vinifera]2.2e-2326.54Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------
        G+ +FDG NF +W+MQ+ D +  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                                     
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------

Query:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------
          + E  SV  H+NE   + N+L  V I F +E++A+ +++SL +SWE M+M VSNS              ++ E I R                     
Subjt:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------

Query:  -MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVV
         +D+ AS H +  R    + + G +  +   +G    V G+G+VR+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +G+ V+  
Subjt:  -MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVV

Query:  GHREVSVYV
        G +  ++Y+
Subjt:  GHREVSVYV

KAF8410356.1 hypothetical protein HHK36_002884 [Tetracentron sinense]1.8e-2237.08Show/hide
Query:  ECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNSLVEESIIR-------MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNG
        E  S+  H+NE+  ++N+L S+ +   +E++ + L+SSL DSWET+ + +SNS  +E +         +D  AS H +  + +FTS   G Y  +   N 
Subjt:  ECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNSLVEESIIR-------MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNG

Query:  RLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYVLR
         +SK+ GIG+V L  +   +LVL  VR+VP  ++NLISAGKLD+  Y + F +  WKL R S V+  G+R   +Y ++
Subjt:  RLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYVLR

RVW17147.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.3e-2326.6Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------
        G+ +FDG +F +W+MQ+ D L  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                                     
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------

Query:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIRMD-------------------
          + E  SV  H+NE   + N+L SV I F +E++A+ +++SL +SWE M+M VSNS              ++ E I R D                   
Subjt:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIRMD-------------------

Query:  ------NAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEV
                AS H +  R    + + G +  +   +G    V G+G+VR+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +G+ V
Subjt:  ------NAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEV

Query:  MVVGHREVSVYV
        +  G +  ++Y+
Subjt:  MVVGHREVSVYV

RVW47729.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.2e-2326.33Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA----------------SLVECTSVNSHINEVTHLMNK
        G+ +FDG +F +W+MQ+ D L  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                S+ E  SV  H+NE   + N+
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA----------------SLVECTSVNSHINEVTHLMNK

Query:  LESVHITFLEEVKAVKLMSSLSDSWETMKM----------------------------------------VVSNSLVEESIIR---------MDNAASVH
        L SV I F +E++A+ +++SL +SWE M+M                                        VV+  + +  ++          +D+ AS H
Subjt:  LESVHITFLEEVKAVKLMSSLSDSWETMKM----------------------------------------VVSNSLVEESIIR---------MDNAASVH

Query:  LSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYV
         +  R    + + G +  +   +G    V G+G+VR+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +G+ V+  G +  ++Y+
Subjt:  LSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYV

RVW63120.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.4e-2226.89Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------
        G+ +FDG +F +W+MQ+ D L  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                                     
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------

Query:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------
          +VE  SV  H+NE   + N+L SV I F +E++A+ +++SL +SWE M+MVVSNS              ++ E I R                     
Subjt:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------

Query:  --------MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMR
                +D+ AS H +  R    + + G +  +   +G    V G+G++R+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +
Subjt:  --------MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMR

Query:  GSEVM
        G+ V+
Subjt:  GSEVM

TrEMBL top hitse value%identityAlignment
A0A2N9H4J8 Uncharacterized protein4.7e-2430.23Show/hide
Query:  RFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMN-------------------VASLVECTSVNSHINEVTHLMNK
        +FDG +F +WKMQ+ D L  KK+H   L ++ D M D EW  +D      V L  +++                      + E  +V  H+NE   + N+
Subjt:  RFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMN-------------------VASLVECTSVNSHINEVTHLMNK

Query:  LESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNSLVEESIIRMDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHG
        L SV I F +E++ + +++SL +SWE M+M V           +D+ A+ H+   +  FT+  +G + T+  GN   SK+ GIG+V ++ +    ++L  
Subjt:  LESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNSLVEESIIRMDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHG

Query:  VRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYVLRFSVAK
        VR+VP    NLIS   +D E Y +      WKL +G  V+  G     +Y  R    K
Subjt:  VRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYVLRFSVAK

A0A438C1P0 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-2326.6Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------
        G+ +FDG +F +W+MQ+ D L  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                                     
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------

Query:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIRMD-------------------
          + E  SV  H+NE   + N+L SV I F +E++A+ +++SL +SWE M+M VSNS              ++ E I R D                   
Subjt:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIRMD-------------------

Query:  ------NAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEV
                AS H +  R    + + G +  +   +G    V G+G+VR+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +G+ V
Subjt:  ------NAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEV

Query:  MVVGHREVSVYV
        +  G +  ++Y+
Subjt:  MVVGHREVSVYV

A0A438EJ23 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-2326.33Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA----------------SLVECTSVNSHINEVTHLMNK
        G+ +FDG +F +W+MQ+ D L  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                S+ E  SV  H+NE   + N+
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA----------------SLVECTSVNSHINEVTHLMNK

Query:  LESVHITFLEEVKAVKLMSSLSDSWETMKM----------------------------------------VVSNSLVEESIIR---------MDNAASVH
        L SV I F +E++A+ +++SL +SWE M+M                                        VV+  + +  ++          +D+ AS H
Subjt:  LESVHITFLEEVKAVKLMSSLSDSWETMKM----------------------------------------VVSNSLVEESIIR---------MDNAASVH

Query:  LSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYV
         +  R    + + G +  +   +G    V G+G+VR+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +G+ V+  G +  ++Y+
Subjt:  LSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVGHREVSVYV

A0A438FT35 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-2226.89Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------
        G+ +FDG +F +W+MQ+ D L  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                                     
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------

Query:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------
          +VE  SV  H+NE   + N+L SV I F +E++A+ +++SL +SWE M+MVVSNS              ++ E I R                     
Subjt:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------

Query:  --------MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMR
                +D+ AS H +  R    + + G +  +   +G    V G+G++R+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +
Subjt:  --------MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMR

Query:  GSEVM
        G+ V+
Subjt:  GSEVM

A5AQN2 Uncharacterized protein1.0e-2326.54Show/hide
Query:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------
        G+ +FDG NF +W+MQ+ D +  +K+H   L  + + M  +EW  +D  V+ ++RL LS +VA                                     
Subjt:  GVLRFDGENFWFWKMQVIDLLTYKKIH-KTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVA-------------------------------------

Query:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------
          + E  SV  H+NE   + N+L  V I F +E++A+ +++SL +SWE M+M VSNS              ++ E I R                     
Subjt:  -SLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAVKLMSSLSDSWETMKMVVSNS--------------LVEESIIR---------------------

Query:  -MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVV
         +D+ AS H +  R    + + G +  +   +G    V G+G+VR+ + + +  +L  VR++P  + NLIS G+LD+E +   F    WK+ +G+ V+  
Subjt:  -MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVV

Query:  GHREVSVYV
        G +  ++Y+
Subjt:  GHREVSVYV

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.4e-1436.21Show/hide
Query:  MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVG
        +D AAS H +  R  F   + G + T+  GN   SK+ GIG++ ++ +    LVL  VR+VP  +MNLIS   LD + Y S FA   W+L +GS V+  G
Subjt:  MDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISEFAENIWKLMRGSEVMVVG

Query:  HREVSVYVLRFSVAKG
            ++Y     + +G
Subjt:  HREVSVYVLRFSVAKG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTAGTGGAAAGTCATGTCACTACTTTGGCGGGGTTTTGAGATTTGATGGGGAAAATTTTTGGTTTTGGAAAATGCAAGTGATAGATCTTCTTACATACAAGAA
GATACACAAAACCTTGAAGGAACGACAAGATGTGATGACAGATAAGGAATGGGTGGAGATGGATGAATATGTCATAGCGATCGTCAGGTTGTGCTTGTCAATGAATGTGG
CAAGTCTTGTGGAATGCACATCAGTGAACTCCCACATAAATGAGGTCACTCATCTAATGAACAAGCTGGAGTCAGTGCATATCACTTTTTTAGAGGAGGTGAAGGCTGTA
AAACTGATGTCCTCTTTGTCTGACAGTTGGGAGACGATGAAGATGGTAGTGTCAAATTCGTTGGTTGAAGAATCAATCATCAGAATGGACAATGCAGCTTCGGTACATTT
ATCTTCGGATAGGAGTTGGTTCACGTCCCTCATTATAGGCAGTTATCACACGATGATGACGGGGAACGGGAGACTCTCCAAGGTCCGAGGAATTGGGGAGGTGCGTCTAA
GGATTGACAGTAAGACTGAGTTAGTTTTGCATGGTGTCAGGTATGTACCCAGTTTTAAAATGAATTTGATATCAGCGGGAAAACTGGATAATGAGGACTACATAAGTGAG
TTTGCAGAAAATATATGGAAACTCATGAGGGGATCCGAGGTAATGGTTGTTGGCCACAGAGAAGTTTCAGTGTACGTATTGAGGTTTAGCGTTGCCAAAGGATCAAGAGA
CAAGTTATGCACCTGGTTGCAGATAGTTCAAGGGGAGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCTAGTGGAAAGTCATGTCACTACTTTGGCGGGGTTTTGAGATTTGATGGGGAAAATTTTTGGTTTTGGAAAATGCAAGTGATAGATCTTCTTACATACAAGAA
GATACACAAAACCTTGAAGGAACGACAAGATGTGATGACAGATAAGGAATGGGTGGAGATGGATGAATATGTCATAGCGATCGTCAGGTTGTGCTTGTCAATGAATGTGG
CAAGTCTTGTGGAATGCACATCAGTGAACTCCCACATAAATGAGGTCACTCATCTAATGAACAAGCTGGAGTCAGTGCATATCACTTTTTTAGAGGAGGTGAAGGCTGTA
AAACTGATGTCCTCTTTGTCTGACAGTTGGGAGACGATGAAGATGGTAGTGTCAAATTCGTTGGTTGAAGAATCAATCATCAGAATGGACAATGCAGCTTCGGTACATTT
ATCTTCGGATAGGAGTTGGTTCACGTCCCTCATTATAGGCAGTTATCACACGATGATGACGGGGAACGGGAGACTCTCCAAGGTCCGAGGAATTGGGGAGGTGCGTCTAA
GGATTGACAGTAAGACTGAGTTAGTTTTGCATGGTGTCAGGTATGTACCCAGTTTTAAAATGAATTTGATATCAGCGGGAAAACTGGATAATGAGGACTACATAAGTGAG
TTTGCAGAAAATATATGGAAACTCATGAGGGGATCCGAGGTAATGGTTGTTGGCCACAGAGAAGTTTCAGTGTACGTATTGAGGTTTAGCGTTGCCAAAGGATCAAGAGA
CAAGTTATGCACCTGGTTGCAGATAGTTCAAGGGGAGACTTGA
Protein sequenceShow/hide protein sequence
MASSGKSCHYFGGVLRFDGENFWFWKMQVIDLLTYKKIHKTLKERQDVMTDKEWVEMDEYVIAIVRLCLSMNVASLVECTSVNSHINEVTHLMNKLESVHITFLEEVKAV
KLMSSLSDSWETMKMVVSNSLVEESIIRMDNAASVHLSSDRSWFTSLIIGSYHTMMTGNGRLSKVRGIGEVRLRIDSKTELVLHGVRYVPSFKMNLISAGKLDNEDYISE
FAENIWKLMRGSEVMVVGHREVSVYVLRFSVAKGSRDKLCTWLQIVQGET