CuGenDBv2

Gene ID	Moc06g14380
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr6:11282291..11282736
RNA-Seq Expression	Moc06g14380
Synteny	Moc06g14380
Gene Ontology terms	GO:0044238 - primary metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0000166 - nucleotide binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0043167 - ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5762583.1 putative RNA-directed DNA polymerase [Helianthus annuus]

1.6e-10

46.58

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  K FN+ M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

KAF5762683.1 putative RNA-directed DNA polymerase [Helianthus annuus]

4.5e-10

45.21

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  + FN+ M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

KAF5772664.1 putative RNA-directed DNA polymerase [Helianthus annuus]

3.5e-10

46.58

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L AL + YEKPSA  ++FL  + FN+ M EG+ +  HINE   IL++L  MG+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

KAF5775658.1 putative RNA-directed DNA polymerase [Helianthus annuus]

3.5e-10

45.21

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  + FN+ M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

KAF5803956.1 putative RNA-directed DNA polymerase [Helianthus annuus]

2.7e-10

46.58

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  + FNI M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

TrEMBL top hits

e value

%identity

Alignment

A0A0D3CPI7 CCHC-type domain-containing protein

5.8e-11

37.39

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Query:  LLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPDRSPEEIRENVCIYFKGRQHGESALVAHDK
        L++ L D YEKPSAN K+FL  K F++ MEEG ++++H+NE   I+N+L  + I+ D++V+A+ LL S+P+ S E +R               A V++  
Subjt:  LLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPDRSPEEIRENVCIYFKGRQHGESALVAHDK

Query:  GKAKMNYTGKQQYRN
        G  K+N+   + +RN
Subjt:  GKAKMNYTGKQQYRN

A0A251S4W8 Putative zinc finger, CCHC-type, Tubby C-terminal-like domain protein

2.2e-10

45.21

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  + FN+ M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

A0A251SVN6 Putative AMP-dependent synthetase/ligase, Zinc finger, CCHC-type

2.2e-10

45.21

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  + FN+ M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

A0A251T759 Putative zinc finger, CCHC-type

2.2e-10

45.21

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  + FN+ M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

A0A251UE98 Putative bulb-type lectin domain-containing protein

2.2e-10

45.21

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Query:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD
        +++L+AL + YEKPSA  ++FL  + FN+ M EG+ +  HINE   IL++L  +G+K+D+D +A+ LL+S+PD
Subjt:  KELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPD

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.0e-06

34.85

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Query:  LQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMP
        L+  Y   +   K++L  + + +HM EGT   SH+N    ++ +L  +G+KI+E+ KA+ LL S+P
Subjt:  LQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAGAATTGTTGCAGGCCTTGCAAGACAGGTATGAGAAACCTTCTGCTAACACTAAAATATTTCTATGGACGAAGTATTTCAATATCCACATGGAGGAGGGAACCAT
GATGAATTCTCATATTAATGAGCACACCGACATATTAAACAAACTAGAAAGGATGGGCATCAAGATTGATGAGGATGTGAAAGCTATGAGGTTGTTGACATCTATGCCTG
ACAGAAGCCCGGAGGAAATTAGGGAAAATGTCTGCATCTACTTCAAGGGCAGACAACATGGTGAATCAGCTTTGGTGGCTCACGATAAAGGGAAGGCCAAGATGAATTAC
ACGGGGAAACAACAGTATAGAAATTGA

mRNA sequence

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Protein sequence

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MKELLQALQDRYEKPSANTKIFLWTKYFNIHMEEGTMMNSHINEHTDILNKLERMGIKIDEDVKAMRLLTSMPDRSPEEIRENVCIYFKGRQHGESALVAHDKGKAKMNY
TGKQQYRN

Moc06g14380 (gene) of Bitter gourd (OHB3-1) v2 genome