CuGenDBv2

Gene ID	Moc06g14840
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Genome location	chr6:11649124..11649711
RNA-Seq Expression	Moc06g14840
Synteny	Moc06g14840
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]

4.3e-98

91.28

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSKSKRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMAVQEGLT EDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE+YTNGAYKIVDQDGLRIGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]

4.3e-98

91.28

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSKSKRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMAVQEGLT EDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE+YTNGAYKIVDQDGLRIGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]

4.3e-98

91.28

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSKSKRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMAVQEGLT EDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE+YTNGAYKIVDQDGLRIGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

4.3e-98

91.28

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSKSKRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMAVQEGLT EDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE+YTNGAYKIVDQDGLRIGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]

4.3e-98

91.28

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKK+VSKSKRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMAVQEGLT EDN +LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE+YTNGAYKIVDQDGLRIGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

3.5e-98

90.26

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLCSLLKKVVSK+KRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMA+QEGLT EDNA+LRL+ELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE++TNGAYKI+DQDGLRIGPING+FLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

A0A5A7U2B8 Reverse transcriptase

4.6e-98

90.26

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLCSLLKKVVSK+KRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVE VLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K+V+PRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE++TNGAYKI+DQDGLRIGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

A0A5A7USC8 Ribonuclease H

1.8e-97

89.74

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLCSLLKKVVSK+KRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMA+QEGLT EDNA+LRLQELE LD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE++TNG YKI+DQDGLRIGPING+FLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

A0A5A7V3K3 Ribonuclease H

5.1e-97

90.26

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLCSLLKKVVSK+KRDWQE+IGEALWAYRTT+RTPTG T YSLVYGVEAVLPLEREIPSLRMA+QEGLT EDNA+L LQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE++TNGAYKI DQDGLRIGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

A0A5D3D1E5 Ribonuclease H

2.1e-98

90.77

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Query:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD
        MYNAAANGLAEAFNKTLCSLLKKVVSK+KRDWQE+IGEALWAYRTT+RTPTG TPYSLVYGVEAVLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALD

Query:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA
        E+RL+AQQALECYQARMSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTGNKFTPKWDGPY+VKE++TNGAYKI+DQDGL+IGPINGKFLKK+YA
Subjt:  ERRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTACAATGCTGCGGCAAATGGGTTGGCAGAAGCGTTTAACAAAACGCTATGTAGTTTATTGAAGAAAGTGGTCTCCAAGTCCAAGCGAGACTGGCAGGAAAGAATTGG
TGAAGCATTATGGGCGTATCGAACTACCTATCGCACTCCGACTGGTGCTACGCCTTATTCTCTTGTATATGGAGTAGAAGCCGTGCTCCCTCTAGAAAGAGAAATTCCAT
CTCTACGAATGGCGGTACAAGAAGGACTAACAGTGGAGGATAATGCTCAGCTTCGTCTTCAAGAGTTGGAAGCATTGGATGAAAGAAGATTGGATGCCCAACAAGCGCTA
GAATGTTATCAGGCCCGCATGTCTAAGGCTTTCAACAAAAAGGTACGACCTCGATCATTTCAAGTTGGTGAGCTCGTACTTGCAGTGCGAAGACCAATCATTACAACTCG
ACATACAGGGAATAAGTTCACTCCAAAATGGGATGGACCCTATGTTGTAAAAGAACTCTACACGAACGGAGCATACAAGATCGTGGATCAGGACGGCCTCAGAATTGGCC
CAATCAACGGAAAATTCCTAAAGAAATACTATGCTTAA

mRNA sequence

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Protein sequence

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MYNAAANGLAEAFNKTLCSLLKKVVSKSKRDWQERIGEALWAYRTTYRTPTGATPYSLVYGVEAVLPLEREIPSLRMAVQEGLTVEDNAQLRLQELEALDERRLDAQQAL
ECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGNKFTPKWDGPYVVKELYTNGAYKIVDQDGLRIGPINGKFLKKYYA

Moc06g14840 (gene) of Bitter gourd (OHB3-1) v2 genome