CuGenDBv2

Gene ID	Moc06g14940
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Genome location	chr6:11714290..11717112
RNA-Seq Expression	Moc06g14940
Synteny	Moc06g14940
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]

6.7e-40

82.69

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRM+GSASTNFSDIM IGERIEYGV+HGRITST +EPL AKK SHSKKKEGE+  
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGAD
        V  D
Subjt:  VGAD

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]

7.9e-49

90.99

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKKSTKSFKEYAQRW DTAAQVQPPL D ELS MFI+TLKH FYDRMIGSASTNFSDIMTIGERIEYGV+HGRITST +EPL AKKASHSKKKEGEVQM
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGADRHSWKQQ
        VGADRHSWKQQ
Subjt:  VGADRHSWKQQ

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]

2.6e-39

78.18

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKK+ +SFKEY QRW DTAAQ QPP TD ELS+MFI+TLKH FYDRMIGSAST+FSDI+TIGERIEYGV HGRITSTV E  T K  + SKKKEGEVQM
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGADRHSWKQ
        VGADRH W+Q
Subjt:  VGADRHSWKQ

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]

1.2e-39

83.65

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEK ST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIGSASTNFSDIMTIGERIEYGV+H RITST +EPL AKKASHSKKKEGE+  
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGAD
        V  D
Subjt:  VGAD

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]

3.6e-49

90.99

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIG+ASTNFSDIMTIGERIEYGV+HGRITSTV+EPL AKKASHSKKKEGEVQM
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGADRHSWKQQ
        VGADRHSWKQQ
Subjt:  VGADRHSWKQQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CNY7 Ribonuclease H

3.3e-40

82.69

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRM+GSASTNFSDIM IGERIEYGV+HGRITST +EPL AKK SHSKKKEGE+  
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGAD
        V  D
Subjt:  VGAD

A0A6J1D099 Ribonuclease H

3.8e-49

90.99

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKKSTKSFKEYAQRW DTAAQVQPPL D ELS MFI+TLKH FYDRMIGSASTNFSDIMTIGERIEYGV+HGRITST +EPL AKKASHSKKKEGEVQM
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGADRHSWKQQ
        VGADRHSWKQQ
Subjt:  VGADRHSWKQQ

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231

1.2e-39

78.18

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKK+ +SFKEY QRW DTAAQ QPP TD ELS+MFI+TLKH FYDRMIGSAST+FSDI+TIGERIEYGV HGRITSTV E  T K  + SKKKEGEVQM
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGADRHSWKQ
        VGADRH W+Q
Subjt:  VGADRHSWKQ

A0A6J1DZ90 Ribonuclease H

5.6e-40

83.65

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEK ST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIGSASTNFSDIMTIGERIEYGV+H RITST +EPL AKKASHSKKKEGE+  
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGAD
        V  D
Subjt:  VGAD

A0A6J1E2J7 Ribonuclease H

1.7e-49

90.99

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Query:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM
        MEKKST+SFKEYAQRW DTAAQVQPPLTD ELS MFI+TLKH FYDRMIG+ASTNFSDIMTIGERIEYGV+HGRITSTV+EPL AKKASHSKKKEGEVQM
Subjt:  MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQM

Query:  VGADRHSWKQQ
        VGADRHSWKQQ
Subjt:  VGADRHSWKQQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGAAGAAGAGTACAAAGAGCTTTAAAGAGTATGCTCAAAGGTGGGGGGACACGGCAGCTCAAGTCCAACCTCCTTTAACGGATAATGAGCTATCTACCATGTTCAT
CAGTACCCTAAAACATCATTTCTATGATCGGATGATAGGAAGCGCTTCCACAAATTTCTCTGATATTATGACCATCGGAGAAAGGATCGAATACGGGGTTAAACATGGGC
GAATAACCAGTACTGTCGAGGAGCCATTAACCGCAAAGAAGGCAAGTCATTCCAAGAAGAAGGAAGGTGAGGTGCAAATGGTGGGAGCAGACCGACACTCTTGGAAACAA
CAATCATCATTCACATACGCAAAGGATGCTCCATTTAACCGTGTAACTACCACCGTAAGATTACCTTATCTCAACAAACACCTTGACCTGAACAGTCATGTCACTTAA

mRNA sequence

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Protein sequence

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MEKKSTKSFKEYAQRWGDTAAQVQPPLTDNELSTMFISTLKHHFYDRMIGSASTNFSDIMTIGERIEYGVKHGRITSTVEEPLTAKKASHSKKKEGEVQMVGADRHSWKQ
QSSFTYAKDAPFNRVTTTVRLPYLNKHLDLNSHVT

Moc06g14940 (gene) of Bitter gourd (OHB3-1) v2 genome