; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g15260 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g15260
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:11971303..11976570
RNA-Seq ExpressionMoc06g15260
SyntenyMoc06g15260
Gene Ontology termsGO:0048507 - meristem development (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]6.6e-1835.68Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--
        +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   +R   D  +   K  TT   KPL  G  S+S TK  DD  
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--

Query:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV
                                       +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SCV++ V
Subjt:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]6.6e-1835.68Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--
        +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   +R   D  +   K  TT   KPL  G  S+S TK  DD  
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--

Query:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV
                                       +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SCV++ V
Subjt:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]7.8e-1937.36Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFK-----------------KRTTIVDKPL
        + ARTNL EN+Q+QVARFVGGLR +IKE++++QP  FL EAI+ A T+EE I  R K   +R + +TN+   K                  +   V++  
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFK-----------------KRTTIVDKPL

Query:  NQGMASSSKTKGSDDA--------KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP
         Q    S +   S  +        + GHLS+ CPQRKTI   E+G  +  D  I  +EE  ++E D+G+ VSCV++ +   P
Subjt:  NQGMASSSKTKGSDDA--------KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]4.6e-1937.91Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFK-----------------KRTTIVDKPL
        + ARTNL EN+Q+QVARFVGGLR +IKE++++QP  FL EAI+ A T+EE I  R K   +R + +TN+   K                  +   V++  
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFK-----------------KRTTIVDKPL

Query:  NQGMASSSKTKGSDDA--------KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP
         Q    S +   S  +        + GHLSN CPQRKTI   E+G     D  I  +EE  ++E D+G+ VSCV++ +   P
Subjt:  NQGMASSSKTKGSDDA--------KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP

XP_031745468.1 uncharacterized protein LOC116405837 [Cucumis sativus]1.6e-1938.46Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFK-----------------KRTTIVDKPL
        + ARTNL EN+Q+QVARFVGGLR +IKE++++QP  FL EAI+ A T+EE I  R K   +R + +TN+   K                  +   V++  
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFK-----------------KRTTIVDKPL

Query:  NQGMASSSKTKGSDDA--------KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP
         Q    S +   S  +        + GHLSN CPQRKTI   EDG     D  I  +EE  ++E D+G+ VSCV++ +   P
Subjt:  NQGMASSSKTKGSDDA--------KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP

TrEMBL top hitse value%identityAlignment
A0A5D3C3X9 Reverse transcriptase2.3e-1626.21Show/hide
Query:  SDKYLGLLLDMTGKKVIPAKGDSSRADKVAENAAFLSPRSLTNRLLMVEGAVENLQRNVVEIKKILSVSVDKIDNLQEQQDQPKKRNGKDVQGQWV---A
        ++K+LG    MT ++  P   +    ++ AE    LSP++ + RLL +E +VE ++  +  + + L       +  QE Q++ +    + ++G  +    
Subjt:  SDKYLGLLLDMTGKKVIPAKGDSSRADKVAENAAFLSPRSLTNRLLMVEGAVENLQRNVVEIKKILSVSVDKIDNLQEQQDQPKKRNGKDVQGQWV---A

Query:  VGREVQQIVPRTFQEPF-PFQEPAPILRRHQPQHDPALELPQDNPCMFQEP-------FPVPFRYPETPWCYNNPRQNHMTNRRRGAPFES------SSD
        +  +  +   +  + PF  +Q P P   R+Q  +    +    +  + + P       F   F         +  + +  +   + +PF S      S D
Subjt:  VGREVQQIVPRTFQEPF-PFQEPAPILRRHQPQHDPALELPQDNPCMFQEP-------FPVPFRYPETPWCYNNPRQNHMTNRRRGAPFES------SSD

Query:  DDEYQEWETNHRGNQR-----HNQRGVGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKK
           Y +++   +G +           +GAR NL EN+Q+Q+ARF+GGLR +IKE++++QP  FL EAI+ A T+EE    R K      ST T   G + 
Subjt:  DDEYQEWETNHRGNQR-----HNQRGVGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKK

Query:  RTTIV--DKP---LNQGMASSSKTKGS-----DDAKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP
         T  +  DK    +N+G   +   + S        + GH SN CPQRKTI   +  +    +    ++EE  ++E D+G  VSCV++ V   P
Subjt:  RTTIV--DKP---LNQGMASSSKTKGS-----DDAKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP

A0A5D3DGR0 Reverse transcriptase9.3e-1837.78Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQR-----CSTDTNAAGFKKRTTIVDKPLNQGMASSSK---
        +G RTNL E +++ ++ FVGGLR ++KE++++QP   L EAIT A T+EE I NR K   +R      S  T A   K +    +KP+ Q  +S  K   
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQR-----CSTDTNAAGFKKRTTIVDKPLNQGMASSSK---

Query:  ---TKGSDD------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP
            KG +              ++GH SN+CPQRKTI   +D D   +      DEE  V+E DEGD +SC+L+ V   P
Subjt:  ---TKGSDD------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP

A0A5D3E417 Transposon Ty3-I Gag-Pol polyprotein isoform X11.0e-1635.68Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAA---GFKKR------TTIVDK----------
        +GAR NL EN+Q+Q+ARF+GGLR +IKE++++     L EAI+ A T+EE +  R K   +R + +TN +    + K+      T++VDK          
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAA---GFKKR------TTIVDK----------

Query:  ----PLNQGMASSSKTKGS-----DDAKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP
             L +G   ++ T+ S        + GHLSN C QRKTI   ED D+     D   +EE  ++E D+GD +SC+++ V   P
Subjt:  ----PLNQGMASSSKTKGS-----DDAKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X13.2e-1835.68Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--
        +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   +R   D  +   K  TT   KPL  G  S+S TK  DD  
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--

Query:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV
                                       +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SCV++ V
Subjt:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X23.2e-1835.68Show/hide
Query:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--
        +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   +R   D  +   K  TT   KPL  G  S+S TK  DD  
Subjt:  VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD--

Query:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV
                                       +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SCV++ V
Subjt:  ------------------------------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATATAGTGTCTATATCTACTTGTGGCCCAAGGCGTAGAGGACATCATCAAGTAGAGGAGGATGCTCCAATCGAACTTGATGTTCCTATACCTGAAGTTATTTATTA
TAACGTCGATGACGTTCCACTGTTTACACAGACACAAGATGATGCTAGTCCGTCCACGTCAATAGTCATGAAGCCGACTCCTAGTTCAAGTCACAAGTCTTTCCCTTCTA
AGGATCATCTTATCTTCCTCAATAAAAATCCTCCCTTTGGAGTTACACCAAATTGGTATCAGAGCGACAAATATCTTGGGCTTCTTTTGGATATGACCGGCAAGAAAGTT
ATTCCAGCTAAAGGGGATTCTTCTCGTGCCGACAAAGTGGCGGAAAATGCAGCCTTCCTCTCTCCACGATCATTAACCAATCGTTTACTGATGGTTGAAGGTGCTGTAGA
GAATTTGCAGCGAAATGTAGTAGAGATTAAGAAAATCTTGAGTGTTTCGGTGGACAAGATTGACAACTTGCAAGAACAGCAAGATCAGCCAAAAAAGAGGAATGGTAAGG
ATGTTCAAGGTCAATGGGTTGCTGTTGGAAGAGAGGTACAGCAAATAGTTCCAAGAACGTTTCAAGAACCTTTTCCTTTTCAAGAACCCGCTCCTATCCTGCGACGACAT
CAACCTCAACATGATCCGGCACTTGAACTCCCACAAGATAACCCATGTATGTTCCAAGAACCTTTCCCTGTTCCTTTTCGTTACCCAGAAACCCCTTGGTGTTACAACAA
TCCACGTCAAAATCATATGACCAACCGACGTAGGGGTGCTCCATTTGAGTCCTCTAGTGATGATGATGAGTATCAAGAATGGGAAACGAATCACAGGGGCAACCAACGAC
ATAATCAAAGGGGAGTAGGGGCCAGAACAAATTTAGGGGAAAATGACCAATACCAAGTGGCACGGTTCGTAGGAGGCCTCCGGACTAACATCAAAGAGCGGCTACAAGTG
CAACCCATTGGATTCTTGGATGAAGCCATTACCACAGCTATCACTATTGAAGAACAAATTGGCAATCGGTTTAAGTACCAATATCAGCGGTGCTCTACTGATACTAATGC
CGCTGGATTCAAGAAGAGAACAACAATAGTGGATAAACCTTTAAACCAAGGTATGGCTTCTAGCTCTAAAACTAAGGGCAGTGATGATGCTAAAGTGGGCCATTTGTCCA
ATGAGTGCCCTCAAAGGAAGACAATCAATTTCGTGGAAGATGGTGACAGTCTTGATCACGATATTGATATCATTGTGGATGAGGAACGTTTAGTGGTTGAACTCGACGAG
GGTGATCTTGTTTCCTGTGTTCTAGAACATGTTACTAACTTACCATCTTCTATTGATGTTAGTGTGGAAGTTGAACAAATGGCAAAAAGGATAACAAAATTGCATCAAGA
AGTCCGTGATCATATCGAGACGGCAACTCCAAGTATAAGGCAGCAGCAGATACTAAAAGAAGACCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATATAGTGTCTATATCTACTTGTGGCCCAAGGCGTAGAGGACATCATCAAGTAGAGGAGGATGCTCCAATCGAACTTGATGTTCCTATACCTGAAGTTATTTATTA
TAACGTCGATGACGTTCCACTGTTTACACAGACACAAGATGATGCTAGTCCGTCCACGTCAATAGTCATGAAGCCGACTCCTAGTTCAAGTCACAAGTCTTTCCCTTCTA
AGGATCATCTTATCTTCCTCAATAAAAATCCTCCCTTTGGAGTTACACCAAATTGGTATCAGAGCGACAAATATCTTGGGCTTCTTTTGGATATGACCGGCAAGAAAGTT
ATTCCAGCTAAAGGGGATTCTTCTCGTGCCGACAAAGTGGCGGAAAATGCAGCCTTCCTCTCTCCACGATCATTAACCAATCGTTTACTGATGGTTGAAGGTGCTGTAGA
GAATTTGCAGCGAAATGTAGTAGAGATTAAGAAAATCTTGAGTGTTTCGGTGGACAAGATTGACAACTTGCAAGAACAGCAAGATCAGCCAAAAAAGAGGAATGGTAAGG
ATGTTCAAGGTCAATGGGTTGCTGTTGGAAGAGAGGTACAGCAAATAGTTCCAAGAACGTTTCAAGAACCTTTTCCTTTTCAAGAACCCGCTCCTATCCTGCGACGACAT
CAACCTCAACATGATCCGGCACTTGAACTCCCACAAGATAACCCATGTATGTTCCAAGAACCTTTCCCTGTTCCTTTTCGTTACCCAGAAACCCCTTGGTGTTACAACAA
TCCACGTCAAAATCATATGACCAACCGACGTAGGGGTGCTCCATTTGAGTCCTCTAGTGATGATGATGAGTATCAAGAATGGGAAACGAATCACAGGGGCAACCAACGAC
ATAATCAAAGGGGAGTAGGGGCCAGAACAAATTTAGGGGAAAATGACCAATACCAAGTGGCACGGTTCGTAGGAGGCCTCCGGACTAACATCAAAGAGCGGCTACAAGTG
CAACCCATTGGATTCTTGGATGAAGCCATTACCACAGCTATCACTATTGAAGAACAAATTGGCAATCGGTTTAAGTACCAATATCAGCGGTGCTCTACTGATACTAATGC
CGCTGGATTCAAGAAGAGAACAACAATAGTGGATAAACCTTTAAACCAAGGTATGGCTTCTAGCTCTAAAACTAAGGGCAGTGATGATGCTAAAGTGGGCCATTTGTCCA
ATGAGTGCCCTCAAAGGAAGACAATCAATTTCGTGGAAGATGGTGACAGTCTTGATCACGATATTGATATCATTGTGGATGAGGAACGTTTAGTGGTTGAACTCGACGAG
GGTGATCTTGTTTCCTGTGTTCTAGAACATGTTACTAACTTACCATCTTCTATTGATGTTAGTGTGGAAGTTGAACAAATGGCAAAAAGGATAACAAAATTGCATCAAGA
AGTCCGTGATCATATCGAGACGGCAACTCCAAGTATAAGGCAGCAGCAGATACTAAAAGAAGACCAGTGA
Protein sequenceShow/hide protein sequence
MYIVSISTCGPRRRGHHQVEEDAPIELDVPIPEVIYYNVDDVPLFTQTQDDASPSTSIVMKPTPSSSHKSFPSKDHLIFLNKNPPFGVTPNWYQSDKYLGLLLDMTGKKV
IPAKGDSSRADKVAENAAFLSPRSLTNRLLMVEGAVENLQRNVVEIKKILSVSVDKIDNLQEQQDQPKKRNGKDVQGQWVAVGREVQQIVPRTFQEPFPFQEPAPILRRH
QPQHDPALELPQDNPCMFQEPFPVPFRYPETPWCYNNPRQNHMTNRRRGAPFESSSDDDEYQEWETNHRGNQRHNQRGVGARTNLGENDQYQVARFVGGLRTNIKERLQV
QPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDDAKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDE
GDLVSCVLEHVTNLPSSIDVSVEVEQMAKRITKLHQEVRDHIETATPSIRQQQILKEDQ