; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g15550 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g15550
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:12290739..12291347
RNA-Seq ExpressionMoc06g15550
SyntenyMoc06g15550
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]3.5e-7169.39Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        M+EK+PPKFKLP +K++DG+TDP+DHLD Y EW DIYG++EA+RCRVFS TL GS RIWF+QLKR SISSFK LARAFVTQF GG  RSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRERLKENNECRG
        +  ESL DYVARFN+EKLQVEGLTDAV LL F+SGV+DE L FSFGK+T  TFSE  SRAQ YMS GE  +SKR+P GK  D   +R +   +  G
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRERLKENNECRG

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]1.9e-8887.17Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        M+ K+PPKFKLPTVKQFDGT D VDHLDAYREWMDIYGVSEAV+CRVFSTTL+GSAR+WFRQLKRGSISSFKSLA+AFVTQF+GGR RSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER
        R  ESLHDYVARFNEEKLQVEGLT+AVSL+AFMS +RDEHLSFSFGKKTPSTFSE LSRAQ+YMSAGEFF+SKREP+GK++DQ RER
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]3.7e-6869.27Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        M+EK  PKFKLP + ++DG+ DP+DHLDAYREW DIY + EA+RCRVFS TL GSAR WFRQLKR SISSFK LA AFVTQFVGGR +S+PV YLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTD--QKRERLKE
        +  ESL +YVARFNEEKLQVEGLTDAV+L+AF+SGV+DE L FSFGK+TP TF E LSRAQ+YMSAGE  +  R+ + +R +   KRER  E
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTD--QKRERLKE

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]5.4e-9695.72Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        MREK+PPKFKLPTVKQFD TTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER
        RT ESL DYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGK+TP+TFSE LSRAQRYMSAGEFFYSKREPDGKRTD KRER
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.1e-9393.05Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        MREK+PPKFKLPTVK FDG T+PVDHLDAYREWMDIYGVS+A+RCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAF+TQFVGGRCRSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER
        RTAESLHDYVARFNEEKLQ+EGLTDAVSLLAFMSGVRDEHLSFSF K+TPSTFSE LSRAQRYMSA EF YSKREPDGKRTDQKRER
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.7e-7169.39Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        M+EK+PPKFKLP +K++DG+TDP+DHLD Y EW DIYG++EA+RCRVFS TL GS RIWF+QLKR SISSFK LARAFVTQF GG  RSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRERLKENNECRG
        +  ESL DYVARFN+EKLQVEGLTDAV LL F+SGV+DE L FSFGK+T  TFSE  SRAQ YMS GE  +SKR+P GK  D   +R +   +  G
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRERLKENNECRG

A0A6J1D7D2 uncharacterized protein LOC1110183079.0e-8987.17Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        M+ K+PPKFKLPTVKQFDGT D VDHLDAYREWMDIYGVSEAV+CRVFSTTL+GSAR+WFRQLKRGSISSFKSLA+AFVTQF+GGR RSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER
        R  ESLHDYVARFNEEKLQVEGLT+AVSL+AFMS +RDEHLSFSFGKKTPSTFSE LSRAQ+YMSAGEFF+SKREP+GK++DQ RER
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER

A0A6J1DWY0 uncharacterized protein LOC1110252932.6e-9695.72Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        MREK+PPKFKLPTVKQFD TTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER
        RT ESL DYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGK+TP+TFSE LSRAQRYMSAGEFFYSKREPDGKRTD KRER
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER

A0A6J1DZ49 uncharacterized protein LOC1110248511.8e-6869.27Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        M+EK  PKFKLP + ++DG+ DP+DHLDAYREW DIY + EA+RCRVFS TL GSAR WFRQLKR SISSFK LA AFVTQFVGGR +S+PV YLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTD--QKRERLKE
        +  ESL +YVARFNEEKLQVEGLTDAV+L+AF+SGV+DE L FSFGK+TP TF E LSRAQ+YMSAGE  +  R+ + +R +   KRER  E
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTD--QKRERLKE

A0A6J1E1E7 uncharacterized protein LOC1110255485.5e-9493.05Show/hide
Query:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ
        MREK+PPKFKLPTVK FDG T+PVDHLDAYREWMDIYGVS+A+RCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAF+TQFVGGRCRSRPVAYLLTIKQ
Subjt:  MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ

Query:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER
        RTAESLHDYVARFNEEKLQ+EGLTDAVSLLAFMSGVRDEHLSFSF K+TPSTFSE LSRAQRYMSA EF YSKREPDGKRTDQKRER
Subjt:  RTAESLHDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGAGAAGATCCCTCCAAAATTCAAGTTACCCACGGTGAAACAATTCGATGGGACGACCGACCCAGTGGACCATCTAGATGCTTATCGGGAATGGATGGATATCTA
CGGAGTGTCGGAGGCGGTCAGGTGCCGGGTATTCTCGACTACATTAAACGGGTCAGCCAGAATATGGTTTCGACAATTAAAACGAGGGTCAATCTCGAGTTTCAAGAGCT
TGGCCAGAGCATTCGTGACCCAGTTTGTAGGGGGACGGTGTCGGAGCCGACCTGTGGCTTATCTTTTAACTATTAAACAAAGGACGGCAGAGAGTCTACACGACTATGTA
GCTCGGTTCAACGAGGAGAAGCTGCAGGTAGAAGGCCTTACAGACGCTGTATCTCTGCTGGCCTTCATGTCCGGCGTCAGGGATGAGCATTTGTCATTTTCGTTCGGAAA
GAAAACACCGAGTACCTTCTCGGAGGTGCTGAGCCGAGCTCAGAGGTATATGAGCGCTGGTGAGTTCTTTTACTCAAAAAGGGAGCCAGACGGAAAGCGAACCGACCAAA
AGAGGGAGAGATTAAAGGAGAACAACGAGTGTCGCGGGAATGCTACTATACCTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGAGAAGATCCCTCCAAAATTCAAGTTACCCACGGTGAAACAATTCGATGGGACGACCGACCCAGTGGACCATCTAGATGCTTATCGGGAATGGATGGATATCTA
CGGAGTGTCGGAGGCGGTCAGGTGCCGGGTATTCTCGACTACATTAAACGGGTCAGCCAGAATATGGTTTCGACAATTAAAACGAGGGTCAATCTCGAGTTTCAAGAGCT
TGGCCAGAGCATTCGTGACCCAGTTTGTAGGGGGACGGTGTCGGAGCCGACCTGTGGCTTATCTTTTAACTATTAAACAAAGGACGGCAGAGAGTCTACACGACTATGTA
GCTCGGTTCAACGAGGAGAAGCTGCAGGTAGAAGGCCTTACAGACGCTGTATCTCTGCTGGCCTTCATGTCCGGCGTCAGGGATGAGCATTTGTCATTTTCGTTCGGAAA
GAAAACACCGAGTACCTTCTCGGAGGTGCTGAGCCGAGCTCAGAGGTATATGAGCGCTGGTGAGTTCTTTTACTCAAAAAGGGAGCCAGACGGAAAGCGAACCGACCAAA
AGAGGGAGAGATTAAAGGAGAACAACGAGTGTCGCGGGAATGCTACTATACCTCAATAA
Protein sequenceShow/hide protein sequence
MREKIPPKFKLPTVKQFDGTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTAESLHDYV
ARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKKTPSTFSEVLSRAQRYMSAGEFFYSKREPDGKRTDQKRERLKENNECRGNATIPQ