; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g15700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g15700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:12388820..12389725
RNA-Seq ExpressionMoc06g15700
SyntenyMoc06g15700
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]3.0e-9875.31Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT
        M E+E+K+  LMK ++ERD+EIA+LK Q+++R+  ESSQTP +K++DK K + QENQ  Q STS+ASLSVQQLQDMITN+IR QYG  SQ+S +YSK YT
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT

Query:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS
        K I++LRMP GYQPPKFQ FDG GNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNR YST+RTVSMMELTN+
Subjt:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS

Query:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        KQRKGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.1e-9774.9Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT
        M E+E+K+  LMK ++ERD+EIA+LK Q+++R+  ESSQTP +K++DK K + QENQ  Q STS+ASLSVQQLQDMIT++IR QYG  SQ+S +YSK YT
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT

Query:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS
        K I++LRMP GYQPPKFQ FDG GNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNR YST+RTVSMMELTN+
Subjt:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS

Query:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        KQRKGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-9774.9Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT
        M E+E+K+  LMK ++ERD+EIA+LK Q+++R+  ESSQTP +K++DK K + QENQ  Q STS+ASLSVQQLQDMIT++IR QYG  SQ+S +YSK YT
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT

Query:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS
        K I++LRMP GYQPPKFQ FDG GNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNR YST+RTVSMMELTN+
Subjt:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS

Query:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        KQRKGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.1e-9774.9Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT
        M E+E+K+  LMK ++ERD+EIA+LK Q+++R+  ESSQTP +K++DK K + QENQ  Q STS+ASLSVQQLQDMIT++IR QYG  SQ+S +YSK YT
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT

Query:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS
        K I++LRMP GYQPPKFQ FDG GNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNR YST+RTVSMMELTN+
Subjt:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS

Query:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        KQRKGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]3.0e-9875.31Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT
        M E+E+K+  LMK ++ERD+EIA+LK Q+++R+  ESSQTP +K++DK K + QENQ  Q STS+ASLSVQQLQDMITN+IR QYG  SQ+S +YSK YT
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT

Query:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS
        K I++LRMP GYQPPKFQ FDG GNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNR YST+RTVSMMELTN+
Subjt:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS

Query:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        KQRKGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

TrEMBL top hitse value%identityAlignment
A0A5A7SXL9 Ty3-gypsy retrotransposon protein1.8e-9373.22Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT
        + E+E+K+  LMK +EERD+EIA+LK+Q+++ +  ESSQTP +K  DK K + QENQ  Q S S+ASLSVQQLQDMI N+IR QYG   Q+S +YSKSYT
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT

Query:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS
        K I++LRMP GYQPPKFQ FDG GNPKQHIAHFVETCENAG+RG+QLVKQFVR+LKGNAF+WYTDLEPE I++WEQLE EFLNR YST+R VSMMELTN+
Subjt:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS

Query:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        KQRKGE V++YINRWRALSLDCKD+LTELSAVE+CTQGM
Subjt:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

A0A5A7TZU9 Ribonuclease H1.1e-9374.37Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQSQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYTK
        M E+EKK+  LMK +EERD+EIA LKN IESRD  ESS T  +K  +K K I QE+Q Q STSIASLSVQQLQ+MI N+I+TQYG  +Q+  LYSK YTK
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQSQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYTK

Query:  WINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNSK
         I+++RMP GYQPPKFQ FDG GNPKQH+AHF+ETCE AGTRG+ LVKQFVRTLKGNAFDWYTDLEPE+I+SWEQLER+FLNR YST+R VSM+ELT +K
Subjt:  WINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNSK

Query:  QRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        QRKGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  QRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

A0A5A7UUI7 Ty3-gypsy retrotransposon protein4.0e-9373.53Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQSQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYTK
        M E+EKK+  LMK +EERDYEIA LKN IESRD  ESS    +K  DK K + QE+Q Q STSIASLSVQQLQ+MI ++I+TQYG  +Q+  LYSK YTK
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQSQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYTK

Query:  WINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNSK
         I++LRMP GYQPPKFQ FDG GNPKQH+AHF+ETCE AGTRG+ LVKQFVRTLKGNAFDWY DLEPE+I++WEQLER+FLNR YST+R VSMMELTN++
Subjt:  WINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNSK

Query:  QRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        Q+KGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  QRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

A0A5A7V3R7 Ty3-gypsy retrotransposon protein4.0e-9373.53Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQSQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYTK
        MVE+E+K+  LMK +EERDYEIA LKN IESRD  ESS    +K  DK K + QE+Q Q STSIASLSVQQLQ+MI N+I+TQYG  +Q+  LYSK YTK
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQSQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYTK

Query:  WINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNSK
         I +LRMP GYQPPKFQ FDG GNPKQH+AHF+ETCE AGTRG+ LVKQFV+TLKGNAFDWY DLEPE+I++WEQLER+FLNR YST+R VSMMELTN++
Subjt:  WINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNSK

Query:  QRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        Q+KGE V++YINRWRALSLDCKDRLTELSAVE+CTQGM
Subjt:  QRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

E5GCP6 Ty3-gypsy retrotransposon protein1.8e-9373.22Show/hide
Query:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT
        + E+E+K+  LMK +EERD+EIA+LK+Q+++ +  ESSQTP +K  DK K + QENQ  Q S S+ASLSVQQLQDMI N+IR QYG   Q+S +YSKSYT
Subjt:  MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYT

Query:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS
        K I++LRMP GYQPPKFQ FDG GNPKQHIAHFVETCENAG+RG+QLVKQFVR+LKGNAF+WYTDLEPE I++WEQLE EFLNR YST+R VSMMELTN+
Subjt:  KWINDLRMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNS

Query:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM
        KQRKGE V++YINRWRALSLDCKD+LTELSAVE+CTQGM
Subjt:  KQRKGEQVVEYINRWRALSLDCKDRLTELSAVELCTQGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAATAGAAAAGAAGCTTGCTACATTGATGAAGACAATGGAAGAAAGAGATTATGAAATCGCTTCCCTGAAGAATCAGATTGAAAGCAGAGATGTTGTT
GAGTCGAGTCAAACCCCTGCTCTCAAGATAAATGACAAGAGAAAGACTATCGCTCAAGAAAATCAATCGCAATATTCCACTTCGATCGCTTCGTTGTCTGTTCAG
CAACTCCAAGATATGATCACGAACACGATCAGAACGCAATACGGAAGATCTTCTCAAAGCTCCCTCTTGTATTCTAAGTCATATACTAAGTGGATTAATGATCTG
AGAATGCCTGCTGGATACCAACCTCCAAAATTCCAACATTTTGATGGGAATGGCAATCCCAAACAACATATTGCTCACTTCGTCGAAACTTGTGAGAATGCTGGT
ACAAGAGGCAATCAATTGGTCAAGCAGTTCGTCAGAACGTTAAAGGGAAACGCCTTTGACTGGTATACTGATCTCGAGCCTGAAACGATCGAGAGTTGGGAACAG
CTTGAAAGAGAATTCCTAAATCGCCTTTACAGTACGAAGAGAACCGTCAGCATGATGGAGCTCACGAACTCCAAACAAAGAAAAGGCGAACAGGTTGTCGAATAT
ATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGACTTACTGAACTATCTGCTGTCGAATTATGCACTCAAGGTATGAAGGGATGTGATTCCCAGAGC
GGAAGCAGACTTTCGTTGCTGATTTTCGGGATACAAAATCGAATTTTACAGAGGGAAAATACAGAGGAAATACAAACCTTTGAAGAACGTTTCTTCAGTAAGTTC
CCCTCGAACACCACCACCGGATCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTTGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAAATAGAAAAGAAGCTTGCTACATTGATGAAGACAATGGAAGAAAGAGATTATGAAATCGCTTCCCTGAAGAATCAGATTGAAAGCAGAGATGTTGTT
GAGTCGAGTCAAACCCCTGCTCTCAAGATAAATGACAAGAGAAAGACTATCGCTCAAGAAAATCAATCGCAATATTCCACTTCGATCGCTTCGTTGTCTGTTCAG
CAACTCCAAGATATGATCACGAACACGATCAGAACGCAATACGGAAGATCTTCTCAAAGCTCCCTCTTGTATTCTAAGTCATATACTAAGTGGATTAATGATCTG
AGAATGCCTGCTGGATACCAACCTCCAAAATTCCAACATTTTGATGGGAATGGCAATCCCAAACAACATATTGCTCACTTCGTCGAAACTTGTGAGAATGCTGGT
ACAAGAGGCAATCAATTGGTCAAGCAGTTCGTCAGAACGTTAAAGGGAAACGCCTTTGACTGGTATACTGATCTCGAGCCTGAAACGATCGAGAGTTGGGAACAG
CTTGAAAGAGAATTCCTAAATCGCCTTTACAGTACGAAGAGAACCGTCAGCATGATGGAGCTCACGAACTCCAAACAAAGAAAAGGCGAACAGGTTGTCGAATAT
ATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGACTTACTGAACTATCTGCTGTCGAATTATGCACTCAAGGTATGAAGGGATGTGATTCCCAGAGC
GGAAGCAGACTTTCGTTGCTGATTTTCGGGATACAAAATCGAATTTTACAGAGGGAAAATACAGAGGAAATACAAACCTTTGAAGAACGTTTCTTCAGTAAGTTC
CCCTCGAACACCACCACCGGATCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTTGTGGTAG
Protein sequenceShow/hide protein sequence
MVEIEKKLATLMKTMEERDYEIASLKNQIESRDVVESSQTPALKINDKRKTIAQENQSQYSTSIASLSVQQLQDMITNTIRTQYGRSSQSSLLYSKSYTKWINDL
RMPAGYQPPKFQHFDGNGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRLYSTKRTVSMMELTNSKQRKGEQVVEY
INRWRALSLDCKDRLTELSAVELCTQGMKGCDSQSGSRLSLLIFGIQNRILQRENTEEIQTFEERFFSKFPSNTTTGSSSLSSWVSGSCLW