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Moc06g15780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g15780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr6:12429824..12433753
RNA-Seq ExpressionMoc06g15780
SyntenyMoc06g15780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]6.5e-3671.7Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        M+TS + LLA+++LNG+NY  WKSNLNTILV+DDLRFVL E+CPQAPA NA   VR AYD+W+KANDKA+VYILAS++DVLAKKH+   TAK IMDSL+ 
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]3.3e-4893.58Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTS IALLAAQRLNGENYKQWKSNLNTILVIDDL+FVLQEDCPQA APNATVAVR AYD+WIKANDKAKVYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSHA
        MFGQPSS A
Subjt:  MFGQPSSHA

XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]4.9e-4486.24Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTS I LL AQ+LN ENYKQWKSN+NTIL+IDDLRFVLQEDCPQAPAPNATVAVRN YD+WIKANDKAKV ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSHA
        MFGQPSS A
Subjt:  MFGQPSSHA

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]1.8e-4689.91Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS S IALLAAQ+LNGENY+QWKSNLNTILVIDDLRFVLQEDCPQAP  NATVAVRNAYD+WIK+NDKAKVYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSHA
        MFGQPS  A
Subjt:  MFGQPSSHA

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]5.9e-3773.83Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSTI LLA+ +LNG+NY  WKSNLNTILVIDDLRFVL E+CP APAPNA   VR+AYD+W+KAN+KA+VYILASIS+VL+KKHE   T +EIMDSLQ+
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSS
        +FGQPS+
Subjt:  MFGQPSS

TrEMBL top hitse value%identityAlignment
A0A6J1DFZ2 uncharacterized protein LOC1110200951.6e-4893.58Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTS IALLAAQRLNGENYKQWKSNLNTILVIDDL+FVLQEDCPQA APNATVAVR AYD+WIKANDKAKVYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSHA
        MFGQPSS A
Subjt:  MFGQPSSHA

A0A6J1DW68 uncharacterized protein LOC1110246372.4e-4486.24Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTS I LL AQ+LN ENYKQWKSN+NTIL+IDDLRFVLQEDCPQAPAPNATVAVRN YD+WIKANDKAKV ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSHA
        MFGQPSS A
Subjt:  MFGQPSSHA

A0A6J1DWG6 uncharacterized protein LOC1110250212.8e-3773.83Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSTI LLA+ +LNG+NY  WKSNLNTILVIDDLRFVL E+CP APAPNA   VR+AYD+W+KAN+KA+VYILASIS+VL+KKHE   T +EIMDSLQ+
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSS
        +FGQPS+
Subjt:  MFGQPSS

A0A6J1DWL0 uncharacterized protein LOC1110247348.8e-4789.91Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS S IALLAAQ+LNGENY+QWKSNLNTILVIDDLRFVLQEDCPQAP  NATVAVRNAYD+WIK+NDKAKVYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSHA
        MFGQPS  A
Subjt:  MFGQPSSHA

E2GK51 Gag/pol protein (Fragment)3.1e-3671.7Show/hide
Query:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        M+TS + LLA+++LNG+NY  WKSNLNTILV+DDLRFVL E+CPQAPA NA   VR AYD+W+KANDKA+VYILAS++DVLAKKH+   TAK IMDSL+ 
Subjt:  MSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACGGCCCGCTCTGTAAAGGTTACAGACGACTCGATCCAGGTCGTTCGTGTGGAGACATACGAGTGGGGGTGCTACCACAAGCACGATCCCGAGACCCAAGAGGA
TAGCGAGGAAGATCCGCAACGAAAATCCGTTTCCGCTCTGGGATTCACATCGCTTCAATTGGTATCAGAGCTAGGTTGTAGTTCTGATTTTTTGATAGCATTTTTCTTCG
TGATTCGAACATGTAAGGGCCCGGTGTTTTGGGCATTATTTTTCTGTAAGTCCGGGTTGCTCGAAAGTCGTTCGTGGCGTCGGATTGGGCAAAAGTTGCAGAAAACAGCG
AAGGAGACGAAGCAGACTACGCAGACAGCGCCATGGCGCTATGCAGAAGCGCCATGGCGCTGCGGGACAGCACATAGCACCACGGCGCTGCCCTTAGGCCCCGAGGCGCT
GTCCCTGGTGTTTTCGACGCGGTTCCGAGGCTTCGGTTCGCGCATGTCTACTTCTACTATTGCACTCTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGA
AGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTACAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACGCCTAT
GACAAGTGGATCAAAGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGA
CTCGCTGCAGAGCATGTTTGGACAACCGTCCTCACATGCCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACGGCCCGCTCTGTAAAGGTTACAGACGACTCGATCCAGGTCGTTCGTGTGGAGACATACGAGTGGGGGTGCTACCACAAGCACGATCCCGAGACCCAAGAGGA
TAGCGAGGAAGATCCGCAACGAAAATCCGTTTCCGCTCTGGGATTCACATCGCTTCAATTGGTATCAGAGCTAGGTTGTAGTTCTGATTTTTTGATAGCATTTTTCTTCG
TGATTCGAACATGTAAGGGCCCGGTGTTTTGGGCATTATTTTTCTGTAAGTCCGGGTTGCTCGAAAGTCGTTCGTGGCGTCGGATTGGGCAAAAGTTGCAGAAAACAGCG
AAGGAGACGAAGCAGACTACGCAGACAGCGCCATGGCGCTATGCAGAAGCGCCATGGCGCTGCGGGACAGCACATAGCACCACGGCGCTGCCCTTAGGCCCCGAGGCGCT
GTCCCTGGTGTTTTCGACGCGGTTCCGAGGCTTCGGTTCGCGCATGTCTACTTCTACTATTGCACTCTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGA
AGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTACAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACGCCTAT
GACAAGTGGATCAAAGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGA
CTCGCTGCAGAGCATGTTTGGACAACCGTCCTCACATGCCTCATGA
Protein sequenceShow/hide protein sequence
MDTARSVKVTDDSIQVVRVETYEWGCYHKHDPETQEDSEEDPQRKSVSALGFTSLQLVSELGCSSDFLIAFFFVIRTCKGPVFWALFFCKSGLLESRSWRRIGQKLQKTA
KETKQTTQTAPWRYAEAPWRCGTAHSTTALPLGPEALSLVFSTRFRGFGSRMSTSTIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAY
DKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSHAS