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Moc06g16340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g16340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:12884566..12886689
RNA-Seq ExpressionMoc06g16340
SyntenyMoc06g16340
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]2.9e-3139.25Show/hide
Query:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------
        L+C   ++ADY MRE+H+ +CG++   RS++ K+++QGYYW TM  +TK FT  CD+C  F+ V   PP+   S                          
Subjt:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------

Query:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN
             +D    WA+ + LATIT+ K+ +F+W N++C FGISY II+DNGKQFD++   EFC +LGIKH+ SS  H  A  + +  N
Subjt:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN

XP_022156791.1 uncharacterized protein LOC111023625 [Momordica charantia]7.9e-2935.9Show/hide
Query:  MDVSIAALTWMQPIKEF-----------------------LRECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN
        M++     +WM+PIK+F                       LR+  + +       L+     D  Y +REVH+R+CGN+   RS++ K+++QGYYW TM+
Subjt:  MDVSIAALTWMQPIKEF-----------------------LRECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN

Query:  QETKAFTHFCDRCLGFSYVDPPDARASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSS
        Q+ K F       +   Y                WA+ E L+TIT+A++ NF+WTN++C FGI   I+TDNG+QFD++K  +FC KLGI HL SS
Subjt:  QETKAFTHFCDRCLGFSYVDPPDARASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSS

XP_022158215.1 uncharacterized protein LOC111024751 [Momordica charantia]9.0e-3336.8Show/hide
Query:  MDVSIAALTWMQPIKEFL----------------RECAIVQVQ--------LLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATM
        MD++ A  TWM PIK+FL                R+ A   +Q             LRC D  +A Y MRE+H+ +CGN+   RSMA K+V+QGYYW T+
Subjt:  MDVSIAALTWMQPIKEFL----------------RECAIVQVQ--------LLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATM

Query:  NQETKAFTHFCDRC-------------------------LGFSYVDPPDARASHLDLQLV-------WAKVELLATITKAKIPNFVWTNMVCHFGISYII
         ++TK F   CD+C                          G   +DP       L   +V       W + E LA+IT+ K+ +FVW +++C FGI   I
Subjt:  NQETKAFTHFCDRC-------------------------LGFSYVDPPDARASHLDLQLV-------WAKVELLATITKAKIPNFVWTNMVCHFGISYII

Query:  ITDNGKQFDSSKINEFCIKLGIKHLSSSLTH
        ITDNGKQFD ++ N+FC +LGI+HLS S +H
Subjt:  ITDNGKQFDSSKINEFCIKLGIKHLSSSLTH

XP_022158219.1 protein NYNRIN-like [Momordica charantia]6.0e-2932.6Show/hide
Query:  MDVSIAALTWMQPIKEFL-----------------------RECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN
        M++     +WM PI +F+                       R+ A+ +       LRC    +  Y +REVH+ +CGN+   RS++ K+++QGYYW T++
Subjt:  MDVSIAALTWMQPIKEFL-----------------------RECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN

Query:  QETKAFTHFCDRCLGFSYV--DPPDA------------------------------RASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIII
        Q+ K F   CD C  +  V   PP+                                   +D    WA+VE L+ IT++++ +FVWTN++C FGI   I+
Subjt:  QETKAFTHFCDRCLGFSYV--DPPDA------------------------------RASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIII

Query:  TDNGKQFDSSKINEFCIKLGIKHLSSS
        TDNGKQFD++K  +FC KLGI HL SS
Subjt:  TDNGKQFDSSKINEFCIKLGIKHLSSS

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]2.7e-2938.17Show/hide
Query:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------
        L+C   ++ADY MRE+H+ +CG++   RS++ K+++QGYYW TM  +TK FT  CD+C  F+ V   PP+   S                          
Subjt:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------

Query:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN
             +D    WA+ + LATIT+ K+  F+W N++C FGI Y II+DNGKQFD++   EF  +LGIKH+ SS  H  A  + +  N
Subjt:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN

TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H1.4e-3139.25Show/hide
Query:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------
        L+C   ++ADY MRE+H+ +CG++   RS++ K+++QGYYW TM  +TK FT  CD+C  F+ V   PP+   S                          
Subjt:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------

Query:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN
             +D    WA+ + LATIT+ K+ +F+W N++C FGISY II+DNGKQFD++   EFC +LGIKH+ SS  H  A  + +  N
Subjt:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN

A0A6J1DV78 Ribonuclease H4.3e-3336.8Show/hide
Query:  MDVSIAALTWMQPIKEFL----------------RECAIVQVQ--------LLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATM
        MD++ A  TWM PIK+FL                R+ A   +Q             LRC D  +A Y MRE+H+ +CGN+   RSMA K+V+QGYYW T+
Subjt:  MDVSIAALTWMQPIKEFL----------------RECAIVQVQ--------LLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATM

Query:  NQETKAFTHFCDRC-------------------------LGFSYVDPPDARASHLDLQLV-------WAKVELLATITKAKIPNFVWTNMVCHFGISYII
         ++TK F   CD+C                          G   +DP       L   +V       W + E LA+IT+ K+ +FVW +++C FGI   I
Subjt:  NQETKAFTHFCDRC-------------------------LGFSYVDPPDARASHLDLQLV-------WAKVELLATITKAKIPNFVWTNMVCHFGISYII

Query:  ITDNGKQFDSSKINEFCIKLGIKHLSSSLTH
        ITDNGKQFD ++ N+FC +LGI+HLS S +H
Subjt:  ITDNGKQFDSSKINEFCIKLGIKHLSSSLTH

A0A6J1DW17 Ribonuclease H3.8e-2935.9Show/hide
Query:  MDVSIAALTWMQPIKEF-----------------------LRECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN
        M++     +WM+PIK+F                       LR+  + +       L+     D  Y +REVH+R+CGN+   RS++ K+++QGYYW TM+
Subjt:  MDVSIAALTWMQPIKEF-----------------------LRECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN

Query:  QETKAFTHFCDRCLGFSYVDPPDARASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSS
        Q+ K F       +   Y                WA+ E L+TIT+A++ NF+WTN++C FGI   I+TDNG+QFD++K  +FC KLGI HL SS
Subjt:  QETKAFTHFCDRCLGFSYVDPPDARASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSS

A0A6J1DYS0 Ribonuclease H2.9e-2932.6Show/hide
Query:  MDVSIAALTWMQPIKEFL-----------------------RECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN
        M++     +WM PI +F+                       R+ A+ +       LRC    +  Y +REVH+ +CGN+   RS++ K+++QGYYW T++
Subjt:  MDVSIAALTWMQPIKEFL-----------------------RECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMN

Query:  QETKAFTHFCDRCLGFSYV--DPPDA------------------------------RASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIII
        Q+ K F   CD C  +  V   PP+                                   +D    WA+VE L+ IT++++ +FVWTN++C FGI   I+
Subjt:  QETKAFTHFCDRCLGFSYV--DPPDA------------------------------RASHLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIII

Query:  TDNGKQFDSSKINEFCIKLGIKHLSSS
        TDNGKQFD++K  +FC KLGI HL SS
Subjt:  TDNGKQFDSSKINEFCIKLGIKHLSSS

A0A6J1DZU0 Ribonuclease H1.3e-2938.17Show/hide
Query:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------
        L+C   ++ADY MRE+H+ +CG++   RS++ K+++QGYYW TM  +TK FT  CD+C  F+ V   PP+   S                          
Subjt:  LRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYV--DPPDARAS--------------------------

Query:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN
             +D    WA+ + LATIT+ K+  F+W N++C FGI Y II+DNGKQFD++   EF  +LGIKH+ SS  H  A  + +  N
Subjt:  ----HLDLQLVWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTCAGTATTGCGGCTCTGACATGGATGCAACCAATCAAGGAGTTCCTCCGAGAATGCGCAATTGTACAAGTTCAGCTTCTCACTACCTCTTTAAGGTGCCACGA
CACCAATGATGCTGATTATGCTATGCGAGAAGTCCACAAAAGGATATGTGGCAATAATTTCGAGGGCCGCTCTATGGCTATTAAGTTGGTCAAGCAAGGCTACTATTGGG
CAACCATGAACCAAGAGACCAAAGCATTCACCCACTTCTGTGACCGATGCTTGGGGTTTTCCTACGTCGATCCACCAGACGCTCGAGCTTCTCACCTCGATCTCCAGCTT
GTGTGGGCAAAAGTAGAGTTGCTGGCCACCATTACCAAGGCCAAGATCCCAAATTTTGTATGGACGAACATGGTTTGCCATTTTGGCATTTCATACATCATTATCACTGA
TAATGGAAAGCAGTTTGACAGCTCCAAGATCAACGAGTTTTGCATCAAGCTTGGGATAAAGCATTTGAGCTCATCCCTGACACATCTGCACGCAGAATTTAGAACGGACA
ATCGAAATGCCACCACGTCTGCTGAGAGTGCTGCTGGAAAGTGTCGAAATAGAGCATCTATGCTCGAGCTAAAGGCCATCCGAATGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGTCAGTATTGCGGCTCTGACATGGATGCAACCAATCAAGGAGTTCCTCCGAGAATGCGCAATTGTACAAGTTCAGCTTCTCACTACCTCTTTAAGGTGCCACGA
CACCAATGATGCTGATTATGCTATGCGAGAAGTCCACAAAAGGATATGTGGCAATAATTTCGAGGGCCGCTCTATGGCTATTAAGTTGGTCAAGCAAGGCTACTATTGGG
CAACCATGAACCAAGAGACCAAAGCATTCACCCACTTCTGTGACCGATGCTTGGGGTTTTCCTACGTCGATCCACCAGACGCTCGAGCTTCTCACCTCGATCTCCAGCTT
GTGTGGGCAAAAGTAGAGTTGCTGGCCACCATTACCAAGGCCAAGATCCCAAATTTTGTATGGACGAACATGGTTTGCCATTTTGGCATTTCATACATCATTATCACTGA
TAATGGAAAGCAGTTTGACAGCTCCAAGATCAACGAGTTTTGCATCAAGCTTGGGATAAAGCATTTGAGCTCATCCCTGACACATCTGCACGCAGAATTTAGAACGGACA
ATCGAAATGCCACCACGTCTGCTGAGAGTGCTGCTGGAAAGTGTCGAAATAGAGCATCTATGCTCGAGCTAAAGGCCATCCGAATGCCCTAG
Protein sequenceShow/hide protein sequence
MDVSIAALTWMQPIKEFLRECAIVQVQLLTTSLRCHDTNDADYAMREVHKRICGNNFEGRSMAIKLVKQGYYWATMNQETKAFTHFCDRCLGFSYVDPPDARASHLDLQL
VWAKVELLATITKAKIPNFVWTNMVCHFGISYIIITDNGKQFDSSKINEFCIKLGIKHLSSSLTHLHAEFRTDNRNATTSAESAAGKCRNRASMLELKAIRMP