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Moc06g16470 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g16470
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon gag protein
Genome locationchr6:12977187..12977636
RNA-Seq ExpressionMoc06g16470
SyntenyMoc06g16470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8491357.1 hypothetical protein CXB51_014478 [Gossypium anomalum]8.5e-2241.5Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS
        LL+KC +HGIP C+Q+E  +  +N  TR+VVDA ANGA+LSKSY EA+ I ERI+SNN++W  +R+T+G     +H  D  TS+++++S+++ M+    +
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS

Query:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNP------ANQNNS
        N   S A    +    I+C Y+   H F+ CP NP       NQN +
Subjt:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNP------ANQNNS

XP_015381156.1 uncharacterized protein LOC107174626 [Citrus sinensis]6.5e-2240.88Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS
        LL+KC +HGIP C+Q+   +  +N  TRL+VDA  NGALLSKSY EA+ I ERI++NN++W ++R  A   + R+H+ + LT++S ++++L  M+     
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS

Query:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA-----------NQNNSHSNICNP
            +IA   V+ +  +SC Y    H FD CP NPA           NQ+N +SN  NP
Subjt:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA-----------NQNNSHSNICNP

XP_022156835.1 uncharacterized protein LOC111023669 [Momordica charantia]1.2e-2845.34Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS
        LLQKC +HGIP+C+QIE  +  +++ TRLV+DA  NGALL K YAEAFNI ERISSNNH WS+ R+  G   + +++ +   ++++K+ NL +++M++M+
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS

Query:  NAR---ASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA----------NQNNSHSNICNP
              AS  +  VS +Q ISCS+ EGEHH++  P NP           N  NS+SN  NP
Subjt:  NAR---ASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA----------NQNNSHSNICNP

XP_022159060.1 uncharacterized protein LOC111025500 [Momordica charantia]3.9e-2746.1Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNM-
        L+QK LY GIP+C+QI+  +  +++ TRLV+DA ANGALL+K YAEAFNI ERISSNN  WS+ R+  G  S+  ++ +  T+++ KI NL D++M++M 
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNM-

Query:  --SNARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPANQN---NSHSNICNP
          S   AS  +  VS +Q ISCS+  GE+ ++ CP NP + +   N+ +N  NP
Subjt:  --SNARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPANQN---NSHSNICNP

XP_024039397.1 uncharacterized protein LOC112098028 [Citrus clementina]1.0e-2245.32Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS
        LL++C YHGIP  +Q+E  +  +N+ TRL+VDA ANGALLSKSY EA+ I ERI+ NN++W+++R  A   S  +H+ D +T++S ++++L + M+K M+
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS

Query:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPANQN
         A A++ +     V  +SC Y   EH FD CP NPA+ N
Subjt:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPANQN

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like2.3e-2040.82Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS
        LLQKC +HGIP C+Q+E  +  +   TR+VVDA ANGALLSKSY EA+ I ERI+SNN++W  SR+ +G     +H+ D +TS+++++S+++ M     +
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS

Query:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNP------ANQNNS
        N   S A    +  + I+  Y    H  + CP NP       NQN +
Subjt:  NARASIARVEVSGVQAISCSYFEGEHHFDLCPWNP------ANQNNS

A0A6J1DAK9 uncharacterized protein LOC1110189101.0e-2039.13Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNM-
        L+QKCL+H IP+C+ IE  +  +++ TRLV     N ALL+K YAEAFNI ERISSN H  S++R+  G  ++R+++    ++ ++KI N+ D++ ++M 
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNM-

Query:  --SNARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA----------NQNNSHSNICNP
          S   A   +   S  Q  S S++ G HH++ CP NP           ++NNS+SN  NP
Subjt:  --SNARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA----------NQNNSHSNICNP

A0A6J1DRG1 uncharacterized protein LOC1110236695.9e-2945.34Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS
        LLQKC +HGIP+C+QIE  +  +++ TRLV+DA  NGALL K YAEAFNI ERISSNNH WS+ R+  G   + +++ +   ++++K+ NL +++M++M+
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS

Query:  NAR---ASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA----------NQNNSHSNICNP
              AS  +  VS +Q ISCS+ EGEHH++  P NP           N  NS+SN  NP
Subjt:  NAR---ASIARVEVSGVQAISCSYFEGEHHFDLCPWNPA----------NQNNSHSNICNP

A0A6J1DXK5 uncharacterized protein LOC1110255001.9e-2746.1Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNM-
        L+QK LY GIP+C+QI+  +  +++ TRLV+DA ANGALL+K YAEAFNI ERISSNN  WS+ R+  G  S+  ++ +  T+++ KI NL D++M++M 
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNM-

Query:  --SNARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPANQN---NSHSNICNP
          S   AS  +  VS +Q ISCS+  GE+ ++ CP NP + +   N+ +N  NP
Subjt:  --SNARASIARVEVSGVQAISCSYFEGEHHFDLCPWNPANQN---NSHSNICNP

A0A6J1EEI2 uncharacterized protein LOC1114333946.6e-2038.32Show/hide
Query:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS
        +L+KC +HG+P C+Q+E  +  +N  T+ VVDA ANGA+LSK+Y EA+ I ERI+SNN +W++ RS  G  +R + + D L+SI+ +++++ + +++N++
Subjt:  LLQKCLYHGIPKCVQIENIW--MNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMS

Query:  NARASIARVEVSGVQAI------SCSYFEGEHHFDLCPWNPAN-------------QNNSHSNICNP
          + S+ +  V  V  I      SC Y   EH FD CP NPA+             +NN  SN  NP
Subjt:  NARASIARVEVSGVQAI------SCSYFEGEHHFDLCPWNPAN-------------QNNSHSNICNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCTTTTGCAAAAGTGCCTATACCACGGTATTCCCAAGTGTGTTCAGATCGAGAATATTTGGATGAATGAAGATACAAGATTAGTGGTAGATGCTTATGCA
AATGGAGCTCTCTTATCGAAGTCATATGCTGAAGCATTCAACATCTTTGAACGAATCTCGTCTAACAACCACAAATGGTCGAACTCAAGATCAACTGCGGGTAAC
AATTCAAGACGAATGCATGATGATGATGTGCTAACTTCGATAAGCACAAAGATCTCAAATCTAGCGGACATGATGATGAAGAATATGTCTAATGCTAGAGCATCT
ATTGCTAGAGTAGAAGTTAGTGGTGTCCAAGCAATTTCATGCTCCTACTTTGAAGGAGAACACCACTTTGATCTCTGTCCATGGAATCCAGCAAATCAAAATAAT
TCTCACTCCAACATATGCAACCCATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCTTTTGCAAAAGTGCCTATACCACGGTATTCCCAAGTGTGTTCAGATCGAGAATATTTGGATGAATGAAGATACAAGATTAGTGGTAGATGCTTATGCA
AATGGAGCTCTCTTATCGAAGTCATATGCTGAAGCATTCAACATCTTTGAACGAATCTCGTCTAACAACCACAAATGGTCGAACTCAAGATCAACTGCGGGTAAC
AATTCAAGACGAATGCATGATGATGATGTGCTAACTTCGATAAGCACAAAGATCTCAAATCTAGCGGACATGATGATGAAGAATATGTCTAATGCTAGAGCATCT
ATTGCTAGAGTAGAAGTTAGTGGTGTCCAAGCAATTTCATGCTCCTACTTTGAAGGAGAACACCACTTTGATCTCTGTCCATGGAATCCAGCAAATCAAAATAAT
TCTCACTCCAACATATGCAACCCATTGTAA
Protein sequenceShow/hide protein sequence
MGLLQKCLYHGIPKCVQIENIWMNEDTRLVVDAYANGALLSKSYAEAFNIFERISSNNHKWSNSRSTAGNNSRRMHDDDVLTSISTKISNLADMMMKNMSNARAS
IARVEVSGVQAISCSYFEGEHHFDLCPWNPANQNNSHSNICNPL