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Moc06g16580 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g16580
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr6:13035713..13037731
RNA-Seq ExpressionMoc06g16580
SyntenyMoc06g16580
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_020211736.1 uncharacterized protein LOC109796476 [Cajanus cajan]2.3e-0531.43Show/hide
Query:  PTFRHPVQDLEGMDIDLQEFLENRRKEHESQGQ------SDLRDLLNHRCQIPTEERPDATLSNHNGYPDKV------PNEET--TRWVG-------HPF
        PT R  ++ +E M     E +EN RK+HE+  Q      +  R+   H    P           H   PD         +E+T  +R VG       HPF
Subjt:  PTFRHPVQDLEGMDIDLQEFLENRRKEHESQGQ------SDLRDLLNHRCQIPTEERPDATLSNHNGYPDKV------PNEET--TRWVG-------HPF

Query:  TDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMDL
         D +M V +PP +K   ++RYDGT DP +HID +  +++L
Subjt:  TDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMDL

XP_022156088.1 uncharacterized protein LOC111023060 [Momordica charantia]3.1e-0556.1Show/hide
Query:  PFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD
        PFT +++  +IPPKFK PTMK YDG+KDP D++++F   MD
Subjt:  PFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.0e-0532.35Show/hide
Query:  RKEHESQ----GQSDLRDLLNHRCQI---PTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRM
        +K+H+S     G+SD  D  +    +      +RP+++   H+        EE       PFT+ +M   +PPKFK PT+K++D T DP+DH+D +   M
Subjt:  RKEHESQ----GQSDLRDLLNHRCQI---PTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRM

Query:  DL
        D+
Subjt:  DL

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]5.2e-0530.39Show/hide
Query:  RKEHESQGQSDLRDLLNHRCQIPTE-------ERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRM
        +K+H+S   +  ++  ++R   P         +RP+++   HN        EE       PFT+ +M   +PPKFK PT+K +DG  +P+DH+D +   M
Subjt:  RKEHESQGQSDLRDLLNHRCQIPTE-------ERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRM

Query:  DL
        D+
Subjt:  DL

XP_022159160.1 uncharacterized protein LOC111025585 [Momordica charantia]1.0e-0539.51Show/hide
Query:  DLLNHRCQIPTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD
        DL+ HR     E   D    N + + D    E        PFT +V+   IPPKFK P MK YDG+KDP D++++F   MD
Subjt:  DLLNHRCQIPTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD

TrEMBL top hitse value%identityAlignment
A0A6J1DPC9 uncharacterized protein LOC1110222802.5e-0528.05Show/hide
Query:  PSPRHMTSPQPTFRHPVQDLEGMDI-----DLQEFLENRRKEHESQGQSDL---RDLLNHRCQIPTEERPDATLSNHNGYPDKVPNEETTRWVGH-----
        P  +   S QP  R P+ + EG+D      DL++ L +++K+   + +  L   R+  N   +  ++ +P          P+ V N E    + H     
Subjt:  PSPRHMTSPQPTFRHPVQDLEGMDI-----DLQEFLENRRKEHESQGQSDL---RDLLNHRCQIPTEERPDATLSNHNGYPDKVPNEETTRWVGH-----

Query:  -----------------------PFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD
                               PFT ++M   IPPKFK PTMK YDG+KDP D++++F   MD
Subjt:  -----------------------PFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD

A0A6J1DPN4 uncharacterized protein LOC1110230601.5e-0556.1Show/hide
Query:  PFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD
        PFT +++  +IPPKFK PTMK YDG+KDP D++++F   MD
Subjt:  PFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD

A0A6J1DWY0 uncharacterized protein LOC1110252931.9e-0532.35Show/hide
Query:  RKEHESQ----GQSDLRDLLNHRCQI---PTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRM
        +K+H+S     G+SD  D  +    +      +RP+++   H+        EE       PFT+ +M   +PPKFK PT+K++D T DP+DH+D +   M
Subjt:  RKEHESQ----GQSDLRDLLNHRCQI---PTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRM

Query:  DL
        D+
Subjt:  DL

A0A6J1DXW4 uncharacterized protein LOC1110255855.1e-0639.51Show/hide
Query:  DLLNHRCQIPTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD
        DL+ HR     E   D    N + + D    E        PFT +V+   IPPKFK P MK YDG+KDP D++++F   MD
Subjt:  DLLNHRCQIPTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMD

A0A7J0DBQ5 Retrotrans_gag domain-containing protein2.5e-0550.98Show/hide
Query:  EETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMDL
        EE       PFT  VM V++P KFK PT++ +DGTKDPLDH++ +   MDL
Subjt:  EETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATTTTGGGTTACGGAGTTCAGTAGCCCTTAGCCCCTTAGACCCTTATTACGAAGAATTTACATTTGACTCTTTAGAACTCTTTGACCCAGCTAGGCTTCCCTC
TCTCATACCTTCCTTAGACGTAGGGACCTCGAGGGTTGGGGGAGATACCAAGGAATGTTCTTTTACTAAGGCGGCGGCTGAGAGAGCGACTATTGGGGTAGCGAGCAGTG
AGTTTTCAGGTAGGACTTCGAACGAACCTGATAGTGTATATCTGAGTTGTGCTGGTATTACTGTTATATTAGAGCGAGTGAATACAGTTGAAGTGCGACCAGATGGGGTT
GATGTACATTGTTCGAGCATAGACGCCATTACTGTAGCTCCTGAGGTATCACAACTGTCGATGTCATCTCTAGACCGATACTTATCTGTTGGGCTCACCAGCATTCGCTC
CACTATTACTCAGAGTACTCTGGATTTATATCGTTTCACTTATAAAATTCCAGAGAACATCATTATGCGCGTGTCGAGTCCTGATGAGCGGATGTGTAGCCCACCTCCAA
GTGAAACGACCTTATACACTATCACGTTTAGTCATGGCCTACGTCTTCCTCTTACCCATGTCCTAGTAATATGGCGGTGGGGGAGGCTTGATCGTGGAGACTTTCAGAGC
AAAGGTGTGAAGGTTGTTCCTATCTGCTATTCTTCACACTTTGCTCTGAAGGTTGTTCCTCCTCGGGAAAACCTGTACTTTTGTTTATCGATGAGAAAAGAGGATAAGCC
CTTAGTGGTATCAGATCCGATAGGCCGTAATAACGCAAACTGCCCTCTACGACGAATGCAACATCCTAGCCCGAGGCATATGACGTCCCCCCAGCCAACTTTCCGGCATC
CGGTTCAAGACTTAGAGGGAATGGATATCGACCTGCAGGAATTCCTGGAAAACCGAAGAAAAGAACATGAAAGCCAAGGACAATCGGATTTGCGCGACCTCCTCAACCAT
CGCTGCCAAATCCCTACTGAGGAACGTCCAGACGCTACGTTAAGTAATCATAATGGTTACCCCGATAAGGTACCAAACGAAGAAACCACGCGATGGGTCGGGCACCCGTT
CACAGACAATGTCATGGCAGTAGCAATACCGCCAAAGTTCAAATGGCCAACCATGAAGCGATATGATGGTACCAAAGATCCATTGGACCATATTGACATCTTTAGTGTAC
GGATGGATCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGATTTTGGGTTACGGAGTTCAGTAGCCCTTAGCCCCTTAGACCCTTATTACGAAGAATTTACATTTGACTCTTTAGAACTCTTTGACCCAGCTAGGCTTCCCTC
TCTCATACCTTCCTTAGACGTAGGGACCTCGAGGGTTGGGGGAGATACCAAGGAATGTTCTTTTACTAAGGCGGCGGCTGAGAGAGCGACTATTGGGGTAGCGAGCAGTG
AGTTTTCAGGTAGGACTTCGAACGAACCTGATAGTGTATATCTGAGTTGTGCTGGTATTACTGTTATATTAGAGCGAGTGAATACAGTTGAAGTGCGACCAGATGGGGTT
GATGTACATTGTTCGAGCATAGACGCCATTACTGTAGCTCCTGAGGTATCACAACTGTCGATGTCATCTCTAGACCGATACTTATCTGTTGGGCTCACCAGCATTCGCTC
CACTATTACTCAGAGTACTCTGGATTTATATCGTTTCACTTATAAAATTCCAGAGAACATCATTATGCGCGTGTCGAGTCCTGATGAGCGGATGTGTAGCCCACCTCCAA
GTGAAACGACCTTATACACTATCACGTTTAGTCATGGCCTACGTCTTCCTCTTACCCATGTCCTAGTAATATGGCGGTGGGGGAGGCTTGATCGTGGAGACTTTCAGAGC
AAAGGTGTGAAGGTTGTTCCTATCTGCTATTCTTCACACTTTGCTCTGAAGGTTGTTCCTCCTCGGGAAAACCTGTACTTTTGTTTATCGATGAGAAAAGAGGATAAGCC
CTTAGTGGTATCAGATCCGATAGGCCGTAATAACGCAAACTGCCCTCTACGACGAATGCAACATCCTAGCCCGAGGCATATGACGTCCCCCCAGCCAACTTTCCGGCATC
CGGTTCAAGACTTAGAGGGAATGGATATCGACCTGCAGGAATTCCTGGAAAACCGAAGAAAAGAACATGAAAGCCAAGGACAATCGGATTTGCGCGACCTCCTCAACCAT
CGCTGCCAAATCCCTACTGAGGAACGTCCAGACGCTACGTTAAGTAATCATAATGGTTACCCCGATAAGGTACCAAACGAAGAAACCACGCGATGGGTCGGGCACCCGTT
CACAGACAATGTCATGGCAGTAGCAATACCGCCAAAGTTCAAATGGCCAACCATGAAGCGATATGATGGTACCAAAGATCCATTGGACCATATTGACATCTTTAGTGTAC
GGATGGATCTTTAG
Protein sequenceShow/hide protein sequence
MNDFGLRSSVALSPLDPYYEEFTFDSLELFDPARLPSLIPSLDVGTSRVGGDTKECSFTKAAAERATIGVASSEFSGRTSNEPDSVYLSCAGITVILERVNTVEVRPDGV
DVHCSSIDAITVAPEVSQLSMSSLDRYLSVGLTSIRSTITQSTLDLYRFTYKIPENIIMRVSSPDERMCSPPPSETTLYTITFSHGLRLPLTHVLVIWRWGRLDRGDFQS
KGVKVVPICYSSHFALKVVPPRENLYFCLSMRKEDKPLVVSDPIGRNNANCPLRRMQHPSPRHMTSPQPTFRHPVQDLEGMDIDLQEFLENRRKEHESQGQSDLRDLLNH
RCQIPTEERPDATLSNHNGYPDKVPNEETTRWVGHPFTDNVMAVAIPPKFKWPTMKRYDGTKDPLDHIDIFSVRMDL