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Moc06g17540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g17540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:13750140..13750535
RNA-Seq ExpressionMoc06g17540
SyntenyMoc06g17540
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152117.1 uncharacterized protein LOC111019907 [Momordica charantia]7.1e-6598.44Show/hide
Query:  RAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQ
        R  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQ
Subjt:  RAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQ

Query:  LLQCIGVAETGYMISEVHEGNCGDHLVG
        LLQCIGVAETGYMISEVHEGNCGDHLVG
Subjt:  LLQCIGVAETGYMISEVHEGNCGDHLVG

XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]5.4e-2047.58Show/hide
Query:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL
        P  QN NADALA LA++YE +L RT+ VEIL G S+   E MDID     +  W +L+IK+L+   LP +++EA + ++ AA Y+LKD  L+K  YSL L
Subjt:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL

Query:  LQCIGVAETGYMISEVHEGNCGDH
        L+C+   E  Y++ E+HEG CG H
Subjt:  LQCIGVAETGYMISEVHEGNCGDH

XP_022158215.1 uncharacterized protein LOC111024751 [Momordica charantia]2.8e-2148.41Show/hide
Query:  YRAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSL
        Y   P  +N+NADALA LAS+YE +LPRT+ VEIL   S+ +PE+MDI  +R   WM  I   L    +P D  +A + RR AAHYL+++  LFK  YSL
Subjt:  YRAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSL

Query:  QLLQCIGVAETGYMISEVHEGNCGDH
         LL+C+   E  Y++ E+HEG CG+H
Subjt:  QLLQCIGVAETGYMISEVHEGNCGDH

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]9.1e-2047.58Show/hide
Query:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL
        P  QN NAD LA LA +YE +L RT+ VEIL G S+   E MDID     +  W + +IK+L+   LP +++EA + +R AA Y+LKD  L+KI YSL L
Subjt:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL

Query:  LQCIGVAETGYMISEVHEGNCGDH
        L+C+   E  Y++ E+HEG CG H
Subjt:  LQCIGVAETGYMISEVHEGNCGDH

XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]6.3e-2146.83Show/hide
Query:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL
        P  QN NADALA LA++Y  +L RT+ VEIL   S+   E MDID  R ++  WM+ +IK+L+   LP++ +E  + +R AA Y+LKD  L+K  YSL L
Subjt:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL

Query:  LQCIGVAETGYMISEVHEGNCGDHLV
        L+C+ + E  Y++ E+HEG CG+H V
Subjt:  LQCIGVAETGYMISEVHEGNCGDHLV

TrEMBL top hitse value%identityAlignment
A0A6J1DFB4 uncharacterized protein LOC1110199073.5e-6598.44Show/hide
Query:  RAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQ
        R  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQ
Subjt:  RAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQ

Query:  LLQCIGVAETGYMISEVHEGNCGDHLVG
        LLQCIGVAETGYMISEVHEGNCGDHLVG
Subjt:  LLQCIGVAETGYMISEVHEGNCGDHLVG

A0A6J1DJC7 Ribonuclease H2.6e-2047.58Show/hide
Query:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL
        P  QN NADALA LA++YE +L RT+ VEIL G S+   E MDID     +  W +L+IK+L+   LP +++EA + ++ AA Y+LKD  L+K  YSL L
Subjt:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL

Query:  LQCIGVAETGYMISEVHEGNCGDH
        L+C+   E  Y++ E+HEG CG H
Subjt:  LQCIGVAETGYMISEVHEGNCGDH

A0A6J1DV78 Ribonuclease H1.4e-2148.41Show/hide
Query:  YRAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSL
        Y   P  +N+NADALA LAS+YE +LPRT+ VEIL   S+ +PE+MDI  +R   WM  I   L    +P D  +A + RR AAHYL+++  LFK  YSL
Subjt:  YRAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSL

Query:  QLLQCIGVAETGYMISEVHEGNCGDH
         LL+C+   E  Y++ E+HEG CG+H
Subjt:  QLLQCIGVAETGYMISEVHEGNCGDH

A0A6J1DZU0 Ribonuclease H4.4e-2047.58Show/hide
Query:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL
        P  QN NAD LA LA +YE +L RT+ VEIL G S+   E MDID     +  W + +IK+L+   LP +++EA + +R AA Y+LKD  L+KI YSL L
Subjt:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL

Query:  LQCIGVAETGYMISEVHEGNCGDH
        L+C+   E  Y++ E+HEG CG H
Subjt:  LQCIGVAETGYMISEVHEGNCGDH

A0A6J1E1Q5 uncharacterized protein LOC1110256233.1e-2146.83Show/hide
Query:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL
        P  QN NADALA LA++Y  +L RT+ VEIL   S+   E MDID  R ++  WM+ +IK+L+   LP++ +E  + +R AA Y+LKD  L+K  YSL L
Subjt:  PALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTAD--WMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQL

Query:  LQCIGVAETGYMISEVHEGNCGDHLV
        L+C+ + E  Y++ E+HEG CG+H V
Subjt:  LQCIGVAETGYMISEVHEGNCGDHLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTATCGAGCAGGTCCTGCGCTCCAAAATGCTAACGCCGACGCCTTAGCCTGCCTGGCGTCATCTTATGAGATGAACCTGCCTCGAACGCTGATGGTTGAA
ATCTTACACGGCTTAAGCCTCGCCGAACCCGAGGTCATGGACATTGACCTCTCGAGGACAGCGGACTGGATGACCCTCATCATCAAGCATTTGGAAATTAGGGAG
TTGCCCGAAGACCGAGTAGAAGCCCTCCGCTTTAGAAGGTGGGCAGCCCACTACCTCCTCAAGGACAGAGTCCTGTTTAAGATATGGTACTCCCTCCAGCTCCTC
CAGTGCATAGGAGTTGCAGAGACCGGTTACATGATCAGTGAAGTCCACGAAGGCAACTGTGGAGATCATCTGGTCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACTATCGAGCAGGTCCTGCGCTCCAAAATGCTAACGCCGACGCCTTAGCCTGCCTGGCGTCATCTTATGAGATGAACCTGCCTCGAACGCTGATGGTTGAA
ATCTTACACGGCTTAAGCCTCGCCGAACCCGAGGTCATGGACATTGACCTCTCGAGGACAGCGGACTGGATGACCCTCATCATCAAGCATTTGGAAATTAGGGAG
TTGCCCGAAGACCGAGTAGAAGCCCTCCGCTTTAGAAGGTGGGCAGCCCACTACCTCCTCAAGGACAGAGTCCTGTTTAAGATATGGTACTCCCTCCAGCTCCTC
CAGTGCATAGGAGTTGCAGAGACCGGTTACATGATCAGTGAAGTCCACGAAGGCAACTGTGGAGATCATCTGGTCGGATGA
Protein sequenceShow/hide protein sequence
MHYRAGPALQNANADALACLASSYEMNLPRTLMVEILHGLSLAEPEVMDIDLSRTADWMTLIIKHLEIRELPEDRVEALRFRRWAAHYLLKDRVLFKIWYSLQLL
QCIGVAETGYMISEVHEGNCGDHLVG