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Moc06g17610 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g17610
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:13791789..13792211
RNA-Seq ExpressionMoc06g17610
SyntenyMoc06g17610
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]7.7e-2544.06Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +PD++T  E + M ++A+S ++L+LSD VLR +    T G+LW KL+S Y   S+ NK+Y+K K   +KM+ +KS +ENLDEF KI+ +L NI +
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK
          S ENQA+IL N LP  Y  VK+ +KY R     ++V++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK

KAA0060177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.5e-2443.36Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +P+++T  E + M ++A+S ++L+LSD VLR +    T G+LW KL++ Y   S+ NKLYLK K   +KM+ +K  +ENLD+F KII +L NI++
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK
          S ENQ +IL N LP  Y  VK+T+KY R     ++V++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK

PON64464.1 hypothetical protein TorRG33x02_273130 [Trema orientale]2.9e-2446.51Show/hide
Query:  DKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENINDT
        D   +P+++ P E + + + A+SLLIL+L+D+VLRQ+  +DTA K+W KL S Y   ++SNK+YLK ++  FKM+  KS ++NLD+F +I   L NI++ 
Subjt:  DKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENINDT

Query:  FSHENQAIILCNFLPHAYNNVKSTMKYSR
         + ENQAII+ N LP +Y ++KST+KY R
Subjt:  FSHENQAIILCNFLPHAYNNVKSTMKYSR

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.5e-2443.36Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +P+++T  E + M ++ +S ++L+LSD VLR +    T G+LW KL+S Y   S+SNK+Y+K K   +KM+ +KS +ENLDEF KII +L NI +
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSRLA---AVVINAIK
          S ENQA+IL N LP  Y  VK+ +KY R +   +++++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSRLA---AVVINAIK

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]5.9e-2544.06Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +PD++T  E + M ++A+S ++L+LSD VLR +    T G+LW KL+S Y   S+ NK+Y+K K   +KM+ +KS +ENLDEF KI+ +L NI +
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK
          S ENQA+IL N LP  Y  VK+ +KY R     ++V++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein1.4e-2446.51Show/hide
Query:  DKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENINDT
        D   +P+++ P E + + + A+SLLIL+L+D+VLRQ+  +DTA K+W KL S Y   ++SNK+YLK ++  FKM+  KS ++NLD+F +I   L NI++ 
Subjt:  DKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENINDT

Query:  FSHENQAIILCNFLPHAYNNVKSTMKYSR
         + ENQAII+ N LP +Y ++KST+KY R
Subjt:  FSHENQAIILCNFLPHAYNNVKSTMKYSR

A0A5A7UB25 Putative gag-pol polyprotein3.7e-2544.06Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +PD++T  E + M ++A+S ++L+LSD VLR +    T G+LW KL+S Y   S+ NK+Y+K K   +KM+ +KS +ENLDEF KI+ +L NI +
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK
          S ENQA+IL N LP  Y  VK+ +KY R     ++V++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK

A0A5A7V025 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-2443.36Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +P+++T  E + M ++A+S ++L+LSD VLR +    T G+LW KL++ Y   S+ NKLYLK K   +KM+ +K  +ENLD+F KII +L NI++
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK
          S ENQ +IL N LP  Y  VK+T+KY R     ++V++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK

A0A5D3CG50 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-2443.36Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +P+++T  E + M ++ +S ++L+LSD VLR +    T G+LW KL+S Y   S+SNK+Y+K K   +KM+ +KS +ENLDEF KII +L NI +
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSRLA---AVVINAIK
          S ENQA+IL N LP  Y  VK+ +KY R +   +++++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSRLA---AVVINAIK

A0A5D3DNU1 Putative gag-pol polyprotein2.9e-2544.06Show/hide
Query:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND
        +D++ +PD++T  E + M ++A+S ++L+LSD VLR +    T G+LW KL+S Y   S+ NK+Y+K K   +KM+ +KS +ENLDEF KI+ +L NI +
Subjt:  MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENIND

Query:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK
          S ENQA+IL N LP  Y  VK+ +KY R     ++V++A+K
Subjt:  TFSHENQAIILCNFLPHAYNNVKSTMKYSR---LAAVVINAIK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-1533.87Show/hide
Query:  PDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENINDTFSHEN
        PD++  E+   + + A S + LHLSD V+  +  EDTA  +W +L+S Y   +++NKLYLK ++ +  M    +   +L+ FN +I++L N+      E+
Subjt:  PDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENINDTFSHEN

Query:  QAIILCNFLPHAYNNVKSTMKYSR
        +AI+L N LP +Y+N+ +T+ + +
Subjt:  QAIILCNFLPHAYNNVKSTMKYSR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGAAGGATGTCCCTGATAGCGTAACTCCGGAGGAACTAAAAGGGATGAAGAAACTTGCCCATAGCTTGTTGATTCTTCATCTATCGGATAGTGTTCTT
CGACAAATGAGAGGTGAAGATACTGCAGGTAAGCTTTGGGGTAAGTTGCAATCTACTTATCAAATAGCATCAGTATCAAATAAATTGTATCTTAAATCTAAGATC
ATTAGCTTTAAGATGGAGTTGAATAAAAGCAGGAAAGAAAATCTTGATGAATTTAACAAAATTATATCAGAATTAGAAAATATTAATGACACATTTTCTCATGAA
AATCAAGCTATTATTCTTTGTAATTTTTTGCCTCATGCCTATAATAATGTTAAGTCTACTATGAAATATAGTAGACTTGCTGCTGTTGTGATTAATGCTATAAAA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAGAAGGATGTCCCTGATAGCGTAACTCCGGAGGAACTAAAAGGGATGAAGAAACTTGCCCATAGCTTGTTGATTCTTCATCTATCGGATAGTGTTCTT
CGACAAATGAGAGGTGAAGATACTGCAGGTAAGCTTTGGGGTAAGTTGCAATCTACTTATCAAATAGCATCAGTATCAAATAAATTGTATCTTAAATCTAAGATC
ATTAGCTTTAAGATGGAGTTGAATAAAAGCAGGAAAGAAAATCTTGATGAATTTAACAAAATTATATCAGAATTAGAAAATATTAATGACACATTTTCTCATGAA
AATCAAGCTATTATTCTTTGTAATTTTTTGCCTCATGCCTATAATAATGTTAAGTCTACTATGAAATATAGTAGACTTGCTGCTGTTGTGATTAATGCTATAAAA
TGA
Protein sequenceShow/hide protein sequence
MDKKDVPDSVTPEELKGMKKLAHSLLILHLSDSVLRQMRGEDTAGKLWGKLQSTYQIASVSNKLYLKSKIISFKMELNKSRKENLDEFNKIISELENINDTFSHE
NQAIILCNFLPHAYNNVKSTMKYSRLAAVVINAIK