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Moc06g17630 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g17630
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposable element Tf2
Genome locationchr6:13814180..13815442
RNA-Seq ExpressionMoc06g17630
SyntenyMoc06g17630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.1e-3665.12Show/hide
Query:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS
        +L PSGNFKALSK+LRIKWW+KF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD +D   +  S AS
Subjt:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS

Query:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP
        VNN    D+ D+D +EG DINDP+LD+QP
Subjt:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.9e-3665.12Show/hide
Query:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS
        +L PSGNFKALSK+LRIKWW+KF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD +D   +  S AS
Subjt:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS

Query:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP
        VNN    D+ D+D +EG DINDP+LD+QP
Subjt:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP

KAA0066358.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.3e-3542.62Show/hide
Query:  MSAENYAMDIQFETVSRRQLGS----------SASLPLPPGNRLV-------------------------------------------------------
        MSA+NYAMD+QFE VSRR+ GS          S+SLP  P   L+                                                       
Subjt:  MSAENYAMDIQFETVSRRQLGS----------SASLPLPPGNRLV-------------------------------------------------------

Query:  ------------------PSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQI
                          PSGNFKALS +LRIKWWKKF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +
Subjt:  ------------------PSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQI

Query:  SDPDDAQTDVDSSASVNNDAVDDEEDFDLFEGYDINDPYLDSQP
        SD +D   +  S ASVN+    D+ D++ +EG DINDP+LD QP
Subjt:  SDPDDAQTDVDSSASVNNDAVDDEEDFDLFEGYDINDPYLDSQP

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.1e-3665.12Show/hide
Query:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS
        +L PSGNFKALSK+LRIKWW+KF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD +D   +  S AS
Subjt:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS

Query:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP
        VNN    D+ D+D +EG DINDP+LD+QP
Subjt:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP

TYK19825.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.2e-3853.16Show/hide
Query:  MSAENYAMDIQFETVSRRQLGSS----------ASLPLPPGNRLV-----------------------------------PSGNFKALSKALRIKWWKKF
        MSAENYAMDIQFE VSR + GSS          +SLP  P   L+                                   PS NFKALSKALRIKWW+KF
Subjt:  MSAENYAMDIQFETVSRRQLGSS----------ASLPLPPGNRLV-----------------------------------PSGNFKALSKALRIKWWKKF

Query:  DYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSASVNNDAVDDEEDFD
        DYS+LE +KMKDW K N+HLQD+TR+EDE+FLL KN +MSSL   G Q +FNSV+NTVAVQIS+PDD+Q +V+S ASVNN  ++DE+D D
Subjt:  DYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSASVNNDAVDDEEDFD

TrEMBL top hitse value%identityAlignment
A0A5A7UVN1 Retrotransposable element Tf22.4e-3665.12Show/hide
Query:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS
        +L PSGNFKALSK+LRIKWW+KF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD +D   +  S AS
Subjt:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS

Query:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP
        VNN    D+ D+D +EG DINDP+LD+QP
Subjt:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP

A0A5A7V6D1 Retrotransposable element Tf21.9e-3665.12Show/hide
Query:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS
        +L PSGNFKALSK+LRIKWW+KF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD +D   +  S AS
Subjt:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS

Query:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP
        VNN    D+ D+D +EG DINDP+LD+QP
Subjt:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP

A0A5A7VF67 Retrotransposable element Tf21.6e-3542.62Show/hide
Query:  MSAENYAMDIQFETVSRRQLGS----------SASLPLPPGNRLV-------------------------------------------------------
        MSA+NYAMD+QFE VSRR+ GS          S+SLP  P   L+                                                       
Subjt:  MSAENYAMDIQFETVSRRQLGS----------SASLPLPPGNRLV-------------------------------------------------------

Query:  ------------------PSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQI
                          PSGNFKALS +LRIKWWKKF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +
Subjt:  ------------------PSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQI

Query:  SDPDDAQTDVDSSASVNNDAVDDEEDFDLFEGYDINDPYLDSQP
        SD +D   +  S ASVN+    D+ D++ +EG DINDP+LD QP
Subjt:  SDPDDAQTDVDSSASVNNDAVDDEEDFDLFEGYDINDPYLDSQP

A0A5A7VIK9 Retrotransposable element Tf22.4e-3665.12Show/hide
Query:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS
        +L PSGNFKALSK+LRIKWW+KF+YS+LE +K+KDW K N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD +D   +  S AS
Subjt:  RLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSAS

Query:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP
        VNN    D+ D+D +EG DINDP+LD+QP
Subjt:  VNNDAVDDEEDFDLFEGYDINDPYLDSQP

A0A5D3D8C1 Retrotransposable element Tf21.5e-3853.16Show/hide
Query:  MSAENYAMDIQFETVSRRQLGSS----------ASLPLPPGNRLV-----------------------------------PSGNFKALSKALRIKWWKKF
        MSAENYAMDIQFE VSR + GSS          +SLP  P   L+                                   PS NFKALSKALRIKWW+KF
Subjt:  MSAENYAMDIQFETVSRRQLGSS----------ASLPLPPGNRLV-----------------------------------PSGNFKALSKALRIKWWKKF

Query:  DYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSASVNNDAVDDEEDFD
        DYS+LE +KMKDW K N+HLQD+TR+EDE+FLL KN +MSSL   G Q +FNSV+NTVAVQIS+PDD+Q +V+S ASVNN  ++DE+D D
Subjt:  DYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDAQTDVDSSASVNNDAVDDEEDFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCAGAGAATTATGCCATGGATATCCAGTTTGAAACGGTATCCAGGCGTCAGCTAGGATCTTCCGCATCCTTACCCCTTCCTCCTGGAAACAGGCTAGTACCCAG
TGGAAACTTCAAAGCGTTGAGCAAAGCTTTACGCATCAAATGGTGGAAAAAATTCGATTATTCCTACCTAGAATCTGACAAGATGAAGGATTGGTTGAAAATCAACGTCC
ATCTTCAAGACATGACAAGACAAGAAGACGAGAGCTTCCTTCTGGCCAAAAATGCTGTCATGAGTTCGCTAGCTGGAGCCGGATCCCAAGCCGACTTCAACTCAGTTCTC
AATACCGTCGCAGTTCAGATTTCTGACCCCGACGATGCCCAGACAGATGTTGACTCTTCCGCCTCTGTCAATAATGATGCCGTAGACGACGAAGAAGACTTCGATCTCTT
CGAAGGATACGACATCAACGACCCATATCTAGATTCACAGCCTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCAGAGAATTATGCCATGGATATCCAGTTTGAAACGGTATCCAGGCGTCAGCTAGGATCTTCCGCATCCTTACCCCTTCCTCCTGGAAACAGGCTAGTACCCAG
TGGAAACTTCAAAGCGTTGAGCAAAGCTTTACGCATCAAATGGTGGAAAAAATTCGATTATTCCTACCTAGAATCTGACAAGATGAAGGATTGGTTGAAAATCAACGTCC
ATCTTCAAGACATGACAAGACAAGAAGACGAGAGCTTCCTTCTGGCCAAAAATGCTGTCATGAGTTCGCTAGCTGGAGCCGGATCCCAAGCCGACTTCAACTCAGTTCTC
AATACCGTCGCAGTTCAGATTTCTGACCCCGACGATGCCCAGACAGATGTTGACTCTTCCGCCTCTGTCAATAATGATGCCGTAGACGACGAAGAAGACTTCGATCTCTT
CGAAGGATACGACATCAACGACCCATATCTAGATTCACAGCCTAGCTGA
Protein sequenceShow/hide protein sequence
MSAENYAMDIQFETVSRRQLGSSASLPLPPGNRLVPSGNFKALSKALRIKWWKKFDYSYLESDKMKDWLKINVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVL
NTVAVQISDPDDAQTDVDSSASVNNDAVDDEEDFDLFEGYDINDPYLDSQPS