; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g17650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g17650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:13830576..13831370
RNA-Seq ExpressionMoc06g17650
SyntenyMoc06g17650
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]1.7e-8165.54Show/hide
Query:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK
        MR ++ TME+MY   V+A  A   +   +A     E+    + P  +      E  +Y+ +  D+R+HL  K+  + R+ + SPS S    NSN +A+S 
Subjt:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK

Query:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH
        Y P+TPE VITREEFD +K +FD QVEALKA+CEKKESSF+DGDLGESPFTSDI+EA IP KFKTPTMKPYDGSKDPKDYVEVFE LMDFQA  DAIKC 
Subjt:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH

Query:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF
         FQIALTGSARLWYRRLPARSISTYSQLRKEFI QF SRHYDRKTATHL  IRQKEGETLREYVTRF
Subjt:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF

XP_022155128.1 uncharacterized protein LOC111022267 [Momordica charantia]5.1e-7873.36Show/hide
Query:  EGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSD
        E  +Y+ +  D+R+HL  K+  + R+ + SPS S    NSN +A+S Y P+TP+ VITREEFD +K +FD QVEALKA CEKKESSF+DGDLGE PFT D
Subjt:  EGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSD

Query:  IMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIR
        I+EAPI PKFKTPTMKPYDGSK+PKDYV+VFE LM+FQA  DAIKC AFQIA TGSARLWYRRLPARSISTYSQLRKEFISQF SR+YDRKTATHLA IR
Subjt:  IMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIR

Query:  QKEGETLREYVTRF
        QK+GETLREYVTRF
Subjt:  QKEGETLREYVTRF

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]1.5e-10990Show/hide
Query:  PGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALK
        PGAPGEKGAPSIQPG+REPIPNDEGVDYSLRDND+RKHLT+KKK+AS EPEDS SYSREFSNSNLKAQSKYKPL PE VI REEFD+MKHRFDEQVEALK
Subjt:  PGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALK

Query:  ARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRK
        ARCEKKES F+D DLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFE LMDFQA  DAIKC AFQIALTGSARLW RRLPARSISTYSQLRK
Subjt:  ARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRK

Query:  EFISQFPSRHYDRKTATHLAIIRQKEGETL
        EFI QF  RHYDRKTATHLA IRQKE ETL
Subjt:  EFISQFPSRHYDRKTATHLAIIRQKEGETL

XP_022156088.1 uncharacterized protein LOC111023060 [Momordica charantia]4.6e-7963.3Show/hide
Query:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK
        MR ++RTMEEMY   V+   A   +   +      E+G     P D E +             D+R HL  K+  + R    S  + +   NSN +A+S 
Subjt:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK

Query:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH
        Y P+ PE VITREEF+ +K +FD QVEALK RCEKKES+F+DGDLGESPFTSDI+EA IPPKFKTPTMK YDGSKDPKDYVEVFE LMDFQA  DAIKC 
Subjt:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH

Query:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF
        AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRHYDRKT THLA IRQKEG+TL+EY+TRF
Subjt:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF

XP_022157897.1 uncharacterized protein LOC111024503 [Momordica charantia]4.0e-9190.67Show/hide
Query:  RASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGS
        RASRE EDSPSYSREFSNS+ KAQSKYKPLTPE VITREEFD+MKHRFDEQVEALKA+CEKKE SF+DGDLGESPFTSDI+E PIPPKFKTPTMK YD S
Subjt:  RASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGS

Query:  KDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF
        KDPKDYVEVFE LMDFQA  DAIKC AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRHYDRKTATHLA IRQKEGETLREYVTRF
Subjt:  KDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF

TrEMBL top hitse value%identityAlignment
A0A6J1DDW5 uncharacterized protein LOC1110196348.2e-8265.54Show/hide
Query:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK
        MR ++ TME+MY   V+A  A   +   +A     E+    + P  +      E  +Y+ +  D+R+HL  K+  + R+ + SPS S    NSN +A+S 
Subjt:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK

Query:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH
        Y P+TPE VITREEFD +K +FD QVEALKA+CEKKESSF+DGDLGESPFTSDI+EA IP KFKTPTMKPYDGSKDPKDYVEVFE LMDFQA  DAIKC 
Subjt:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH

Query:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF
         FQIALTGSARLWYRRLPARSISTYSQLRKEFI QF SRHYDRKTATHL  IRQKEGETLREYVTRF
Subjt:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF

A0A6J1DM55 uncharacterized protein LOC1110222672.5e-7873.36Show/hide
Query:  EGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSD
        E  +Y+ +  D+R+HL  K+  + R+ + SPS S    NSN +A+S Y P+TP+ VITREEFD +K +FD QVEALKA CEKKESSF+DGDLGE PFT D
Subjt:  EGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSD

Query:  IMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIR
        I+EAPI PKFKTPTMKPYDGSK+PKDYV+VFE LM+FQA  DAIKC AFQIA TGSARLWYRRLPARSISTYSQLRKEFISQF SR+YDRKTATHLA IR
Subjt:  IMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIR

Query:  QKEGETLREYVTRF
        QK+GETLREYVTRF
Subjt:  QKEGETLREYVTRF

A0A6J1DPC9 uncharacterized protein LOC1110222807.1e-11090Show/hide
Query:  PGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALK
        PGAPGEKGAPSIQPG+REPIPNDEGVDYSLRDND+RKHLT+KKK+AS EPEDS SYSREFSNSNLKAQSKYKPL PE VI REEFD+MKHRFDEQVEALK
Subjt:  PGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALK

Query:  ARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRK
        ARCEKKES F+D DLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFE LMDFQA  DAIKC AFQIALTGSARLW RRLPARSISTYSQLRK
Subjt:  ARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRK

Query:  EFISQFPSRHYDRKTATHLAIIRQKEGETL
        EFI QF  RHYDRKTATHLA IRQKE ETL
Subjt:  EFISQFPSRHYDRKTATHLAIIRQKEGETL

A0A6J1DPN4 uncharacterized protein LOC1110230602.2e-7963.3Show/hide
Query:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK
        MR ++RTMEEMY   V+   A   +   +      E+G     P D E +             D+R HL  K+  + R    S  + +   NSN +A+S 
Subjt:  MRHRLRTMEEMY---VEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSK

Query:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH
        Y P+ PE VITREEF+ +K +FD QVEALK RCEKKES+F+DGDLGESPFTSDI+EA IPPKFKTPTMK YDGSKDPKDYVEVFE LMDFQA  DAIKC 
Subjt:  YKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCH

Query:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF
        AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRHYDRKT THLA IRQKEG+TL+EY+TRF
Subjt:  AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF

A0A6J1DVR0 uncharacterized protein LOC1110245031.9e-9190.67Show/hide
Query:  RASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGS
        RASRE EDSPSYSREFSNS+ KAQSKYKPLTPE VITREEFD+MKHRFDEQVEALKA+CEKKE SF+DGDLGESPFTSDI+E PIPPKFKTPTMK YD S
Subjt:  RASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITREEFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGS

Query:  KDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF
        KDPKDYVEVFE LMDFQA  DAIKC AFQIALTGSARLWYRRLPARSISTYSQLRKEFISQF SRHYDRKTATHLA IRQKEGETLREYVTRF
Subjt:  KDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCATCGGTTGCGCACAATGGAAGAGATGTACGTCGAGGCAACGCGTGCTAACCGAACTGCGTCTCCCTCTATAGCCCCGGGCGCACCCGGTGAAAAGGGAGCTCC
ATCTATCCAACCTGGCGATCGCGAGCCCATTCCCAACGATGAAGGAGTGGATTACAGCTTGCGGGATAACGATATGAGAAAGCATCTCACTGAAAAGAAGAAGAGAGCAT
CTCGGGAGCCGGAAGACTCTCCTTCCTACTCCCGAGAATTCTCCAACTCGAACCTAAAGGCTCAATCGAAATACAAGCCTCTAACACCAGAAGTTGTGATCACCAGGGAA
GAATTCGACATGATGAAACACAGGTTCGATGAGCAGGTCGAGGCACTCAAAGCCAGGTGCGAGAAGAAGGAAAGCTCATTTAACGATGGCGACTTGGGAGAATCGCCATT
CACTTCGGATATTATGGAGGCCCCAATCCCTCCGAAGTTCAAGACTCCCACTATGAAGCCCTATGATGGGTCTAAGGACCCCAAAGACTATGTTGAGGTCTTCGAGAGCC
TCATGGATTTTCAAGCGACAATGGATGCAATAAAATGCCACGCCTTCCAGATCGCTCTTACCGGCAGCGCACGCCTGTGGTACCGAAGACTGCCGGCTAGGTCGATATCG
ACCTATTCTCAGCTGAGAAAGGAGTTCATTAGCCAGTTCCCTTCTCGACATTACGATAGAAAAACAGCGACTCACCTCGCCATCATTAGACAGAAGGAAGGAGAGACGCT
GAGAGAATATGTCACACGGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCCATCGGTTGCGCACAATGGAAGAGATGTACGTCGAGGCAACGCGTGCTAACCGAACTGCGTCTCCCTCTATAGCCCCGGGCGCACCCGGTGAAAAGGGAGCTCC
ATCTATCCAACCTGGCGATCGCGAGCCCATTCCCAACGATGAAGGAGTGGATTACAGCTTGCGGGATAACGATATGAGAAAGCATCTCACTGAAAAGAAGAAGAGAGCAT
CTCGGGAGCCGGAAGACTCTCCTTCCTACTCCCGAGAATTCTCCAACTCGAACCTAAAGGCTCAATCGAAATACAAGCCTCTAACACCAGAAGTTGTGATCACCAGGGAA
GAATTCGACATGATGAAACACAGGTTCGATGAGCAGGTCGAGGCACTCAAAGCCAGGTGCGAGAAGAAGGAAAGCTCATTTAACGATGGCGACTTGGGAGAATCGCCATT
CACTTCGGATATTATGGAGGCCCCAATCCCTCCGAAGTTCAAGACTCCCACTATGAAGCCCTATGATGGGTCTAAGGACCCCAAAGACTATGTTGAGGTCTTCGAGAGCC
TCATGGATTTTCAAGCGACAATGGATGCAATAAAATGCCACGCCTTCCAGATCGCTCTTACCGGCAGCGCACGCCTGTGGTACCGAAGACTGCCGGCTAGGTCGATATCG
ACCTATTCTCAGCTGAGAAAGGAGTTCATTAGCCAGTTCCCTTCTCGACATTACGATAGAAAAACAGCGACTCACCTCGCCATCATTAGACAGAAGGAAGGAGAGACGCT
GAGAGAATATGTCACACGGTTCTAG
Protein sequenceShow/hide protein sequence
MRHRLRTMEEMYVEATRANRTASPSIAPGAPGEKGAPSIQPGDREPIPNDEGVDYSLRDNDMRKHLTEKKKRASREPEDSPSYSREFSNSNLKAQSKYKPLTPEVVITRE
EFDMMKHRFDEQVEALKARCEKKESSFNDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFESLMDFQATMDAIKCHAFQIALTGSARLWYRRLPARSIS
TYSQLRKEFISQFPSRHYDRKTATHLAIIRQKEGETLREYVTRF