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Moc06g17690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g17690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr6:13863680..13864078
RNA-Seq ExpressionMoc06g17690
SyntenyMoc06g17690
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030495102.1 uncharacterized protein LOC115710889 [Cannabis sativa]4.9e-2162.07Show/hide
Query:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL
        P  QQ  +   + ++S+E LMR+YM KNDA+IQ QAA+LRNLEVQ+GQ+ N+LKN+PQGTLPSD +NP+R GKE C+A+TLR GK L
Subjt:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]1.4e-2053.21Show/hide
Query:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADRV
        P  QQ  +   + ++S+E LMR+YMAKND +IQ QAA+LRNLEVQ+GQ+ N+LKN+PQGTLPSD +NP+R GKE C+A+TLR GK +     S++ A R 
Subjt:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADRV

Query:  EPQAESQTE
        +  +  Q E
Subjt:  EPQAESQTE

XP_030498047.1 uncharacterized protein LOC115713707 [Cannabis sativa]1.7e-2163.22Show/hide
Query:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL
        P  QQ  +   + ++S+E LMR+YMAKNDA+IQ QAA+LRNLEVQ+GQ+ N LKN+PQGTLPSD +NP+R GKE C+A+TLR GK L
Subjt:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL

XP_030507648.1 uncharacterized protein LOC115722545 [Cannabis sativa]1.1e-2063.95Show/hide
Query:  NQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL
        +Q QG++     ++S+E LMR+YMAKNDA+IQ QAA+LRNLEVQ+GQ+ N+LKN+PQGTLPSD +NP+R GKE C+A+TLR GK L
Subjt:  NQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL

XP_030509134.1 uncharacterized protein LOC115723804 [Cannabis sativa]8.3e-2162.07Show/hide
Query:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL
        P  QQ  +   + ++S+E LMR+YMAKNDA+IQ QAA+LRNLEVQ+GQ+ N+LKN+PQGTLPSD  NP+R GKE C+A+TLR GK +
Subjt:  PNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKAL

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like7.9e-1748.31Show/hide
Query:  MPNQQQGTRSI--ANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQA
        +PN  Q  + +  A  SNS+E L++ YMAKNDA+IQ QAA L+NLE Q+GQ+  EL+N+ QG LPSD +NP+  GKE C+ALTLR  K + P        
Subjt:  MPNQQQGTRSI--ANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQA

Query:  DRVEPQAESQTEKVAEEV
        + VE + E    + AEEV
Subjt:  DRVEPQAESQTEKVAEEV

A0A6J1DVZ9 uncharacterized protein LOC1110249701.9e-1846.15Show/hide
Query:  MPNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADR
        MPNQQQGTR  AN SNSME +MREYM +NDA+IQ QAA  RNLEVQ+GQM N+LKN+P+                                    +Q D+
Subjt:  MPNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADR

Query:  VEPQAESQTEKVAEEVTENMPIDEDRVSNA
        +E  AE Q E + E+  ENMPIDED+   A
Subjt:  VEPQAESQTEKVAEEVTENMPIDEDRVSNA

A0A6J1DWK1 uncharacterized protein LOC1110250531.4e-1849.14Show/hide
Query:  SMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADRVEP----QAESQTEKV
        S+E +M++YMA NDA +Q QAA+LRNLE+Q+GQ+  +LK++P G LPSD + PKR  KEQC ALTLR GKALPP +P+     + EP    Q E Q+E+ 
Subjt:  SMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADRVEP----QAESQTEKV

Query:  AEEVTENMPIDEDRVS
        +E     +PI  ++++
Subjt:  AEEVTENMPIDEDRVS

A0A6J1DYG0 uncharacterized protein LOC1110257642.1e-1752.81Show/hide
Query:  NQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPP
        NQ+  T  + N ++++E +M+EYMA+ DA+IQ QAA++RN E Q+GQ+ NELKN+PQG+ P   + PKR+GKEQC+A+TLR G A   P
Subjt:  NQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPP

A0A6J1H7K8 uncharacterized protein LOC1114611672.1e-1746.43Show/hide
Query:  QQQGTRSIAN-PSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADRVE
        Q +GT    + P  S+E L++EYMAKND +IQ Q A+LRNLEVQ+GQ+ NEL+N+P G LPSD + PKR+G EQCQA+ LR GK +        + ++++
Subjt:  QQQGTRSIAN-PSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADRVE

Query:  PQAESQTEKVAE
          ++S++++ A+
Subjt:  PQAESQTEKVAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAACCAGCAGCAAGGGACAAGGTCAATAGCCAACCCTTCTAACTCTATGGAAATCTTGATGAGAGAGTACATGGCTAAGAATGATGCAATGATTCAAAGGCAAGC
GGCTGCACTAAGGAATCTAGAAGTCCAAATGGGACAGATGGTAAATGAGCTAAAGAACAAACCCCAAGGTACTTTGCCAAGTGACATTGACAATCCTAAGAGAAAAGGGA
AGGAGCAATGTCAAGCTTTAACCTTACGATGTGGAAAGGCTTTGCCACCACCCTATCCTTCACATATACAAGCAGACAGAGTGGAACCTCAAGCAGAATCTCAAACAGAA
AAAGTAGCAGAAGAAGTTACAGAGAACATGCCTATCGATGAAGACAGGGTGAGCAATGCTGGAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAACCAGCAGCAAGGGACAAGGTCAATAGCCAACCCTTCTAACTCTATGGAAATCTTGATGAGAGAGTACATGGCTAAGAATGATGCAATGATTCAAAGGCAAGC
GGCTGCACTAAGGAATCTAGAAGTCCAAATGGGACAGATGGTAAATGAGCTAAAGAACAAACCCCAAGGTACTTTGCCAAGTGACATTGACAATCCTAAGAGAAAAGGGA
AGGAGCAATGTCAAGCTTTAACCTTACGATGTGGAAAGGCTTTGCCACCACCCTATCCTTCACATATACAAGCAGACAGAGTGGAACCTCAAGCAGAATCTCAAACAGAA
AAAGTAGCAGAAGAAGTTACAGAGAACATGCCTATCGATGAAGACAGGGTGAGCAATGCTGGAGCATAA
Protein sequenceShow/hide protein sequence
MPNQQQGTRSIANPSNSMEILMREYMAKNDAMIQRQAAALRNLEVQMGQMVNELKNKPQGTLPSDIDNPKRKGKEQCQALTLRCGKALPPPYPSHIQADRVEPQAESQTE
KVAEEVTENMPIDEDRVSNAGA