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Moc06g18150 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g18150
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:14240698..14243894
RNA-Seq ExpressionMoc06g18150
SyntenyMoc06g18150
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064182.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.1e-2149.56Show/hide
Query:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY
        MD SKTL+DN+D+FKK  SEF SL  ++S ENE ++LLNSLP++Y+ VK+A KY ++S+ TDAI+SA++T+ELE Q  ++E+ N +G FVKGK ++N+  
Subjt:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY

Query:  QKNHILTTAQPVA
          ++ L+  +  A
Subjt:  QKNHILTTAQPVA

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.6e-2158.51Show/hide
Query:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKG
        +KMD +K+L +NL +FKKLSS+F  LG +I  ENE+FILLNSLPE+Y+EVK+AL+Y R+ ITT  +ISA++T+EL+L +++R+ SN EG F KG
Subjt:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKG

XP_022152111.1 uncharacterized protein LOC111019900 [Momordica charantia]2.8e-4270.06Show/hide
Query:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY
        MDSSKTLSDNLDDFKKLSSEFNSLG++I  ENEAFILLNSLPESYREVKVALKY RESITTDAIISAVKTKELEL                         
Subjt:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY

Query:  QKNHILTTAQPVAVTTAATTIAAAATITATVTATVTGPLTIVATTVSVAATVPGTSTDHLGVQINQKKQKVGKTYMG
                 QPVAVTTAATTIAAAATITATVTATVTGPLTIVATTVSVAATVPGTST    V    K +K  KT +G
Subjt:  QKNHILTTAQPVAVTTAATTIAAAATITATVTATVTGPLTIVATTVSVAATVPGTSTDHLGVQINQKKQKVGKTYMG

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]4.2e-2262.89Show/hide
Query:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFK
        YKMD +K+L+DNL++FK LSS+F S+G  I  ENEAFILLNSLPE++++VK ALKY RE ITT AIISAV  KELELQ  K++    EG F KG  K
Subjt:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFK

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]6.5e-2361.39Show/hide
Query:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNE
        YKMD++K+L+D L++FK+LSSEF S+G  I  ENEAFILLNSLPES+++ K A+KY RE ITT+AIISAV+ +ELELQ  K+     EG F KGK KN+ 
Subjt:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNE

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-943.8e-1654.88Show/hide
Query:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKR
        +KM+ SKTL++NLD+FKKL++EFN LG+++  E+EA I +NSL ++Y+EVK  LKY RES+  D +I+A+K+KELELQ  ++
Subjt:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKR

A0A5A7V734 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-2149.56Show/hide
Query:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY
        MD SKTL+DN+D+FKK  SEF SL  ++S ENE ++LLNSLP++Y+ VK+A KY ++S+ TDAI+SA++T+ELE Q  ++E+ N +G FVKGK ++N+  
Subjt:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY

Query:  QKNHILTTAQPVA
          ++ L+  +  A
Subjt:  QKNHILTTAQPVA

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-947.8e-2258.51Show/hide
Query:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKG
        +KMD +K+L +NL +FKKLSS+F  LG +I  ENE+FILLNSLPE+Y+EVK+AL+Y R+ ITT  +ISA++T+EL+L +++R+ SN EG F KG
Subjt:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKG

A0A5D3DNU1 Putative gag-pol polyprotein6.4e-1645.63Show/hide
Query:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENS--NAEGHFVKGKFKN
        YKMD SK+L +NLD+F+K+  + N++G+++S EN+A ILLNSLPE+YREVK A+KY R+S+T   ++ A+KT+ LE++  +++     A G   K  +K 
Subjt:  YKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENS--NAEGHFVKGKFKN

Query:  NEK
         E+
Subjt:  NEK

A0A6J1DGM8 uncharacterized protein LOC1110199001.4e-4270.06Show/hide
Query:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY
        MDSSKTLSDNLDDFKKLSSEFNSLG++I  ENEAFILLNSLPESYREVKVALKY RESITTDAIISAVKTKELEL                         
Subjt:  MDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKY

Query:  QKNHILTTAQPVAVTTAATTIAAAATITATVTATVTGPLTIVATTVSVAATVPGTSTDHLGVQINQKKQKVGKTYMG
                 QPVAVTTAATTIAAAATITATVTATVTGPLTIVATTVSVAATVPGTST    V    K +K  KT +G
Subjt:  QKNHILTTAQPVAVTTAATTIAAAATITATVTATVTGPLTIVATTVSVAATVPGTSTDHLGVQINQKKQKVGKTYMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAGATGGATAGCTCTAAGACACTGAGTGATAACTTAGACGACTTCAAGAAACTCTCATCAGAATTTAATAGTCTTGGACAAGAGATAAGCACTGAGAATGAAGC
ATTTATTCTTCTGAATTCACTACCGGAATCTTATAGAGAAGTGAAAGTTGCACTAAAGTACGATAGGGAATCCATAACCACGGATGCAATTATTTCTGCAGTCAAGACAA
AGGAGCTAGAATTGCAGGCTAGAAAAAGAGAAAACTCAAATGCAGAGGGACATTTTGTAAAAGGAAAATTCAAGAACAATGAGAAATATCAAAAGAATCACATTCTCACT
ACTGCTCAGCCTGTCGCCGTTACTACCGCTGCCACCACTATTGCCGCCGCTGCTACAATTACCGCTACCGTCACCGCAACCGTCACTGGTCCGCTTACCATTGTCGCTAC
CACCGTTTCAGTTGCTGCTACTGTTCCCGGGACGTCTACTGACCATTTGGGAGTGCAAATTAATCAAAAGAAGCAAAAAGTCGGAAAAACCTACATGGGAGGTGCCAAGC
GCCTGCGTGGCTGCAGAAAAACTAGTTTTCTTCCAACTTTGCCCTTAATGAAACGCGTCTTCCAATGCGTTTTGGTGGTTCCAACCGATGCATATGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACAAGATGGATAGCTCTAAGACACTGAGTGATAACTTAGACGACTTCAAGAAACTCTCATCAGAATTTAATAGTCTTGGACAAGAGATAAGCACTGAGAATGAAGC
ATTTATTCTTCTGAATTCACTACCGGAATCTTATAGAGAAGTGAAAGTTGCACTAAAGTACGATAGGGAATCCATAACCACGGATGCAATTATTTCTGCAGTCAAGACAA
AGGAGCTAGAATTGCAGGCTAGAAAAAGAGAAAACTCAAATGCAGAGGGACATTTTGTAAAAGGAAAATTCAAGAACAATGAGAAATATCAAAAGAATCACATTCTCACT
ACTGCTCAGCCTGTCGCCGTTACTACCGCTGCCACCACTATTGCCGCCGCTGCTACAATTACCGCTACCGTCACCGCAACCGTCACTGGTCCGCTTACCATTGTCGCTAC
CACCGTTTCAGTTGCTGCTACTGTTCCCGGGACGTCTACTGACCATTTGGGAGTGCAAATTAATCAAAAGAAGCAAAAAGTCGGAAAAACCTACATGGGAGGTGCCAAGC
GCCTGCGTGGCTGCAGAAAAACTAGTTTTCTTCCAACTTTGCCCTTAATGAAACGCGTCTTCCAATGCGTTTTGGTGGTTCCAACCGATGCATATGTGTAG
Protein sequenceShow/hide protein sequence
MYKMDSSKTLSDNLDDFKKLSSEFNSLGQEISTENEAFILLNSLPESYREVKVALKYDRESITTDAIISAVKTKELELQARKRENSNAEGHFVKGKFKNNEKYQKNHILT
TAQPVAVTTAATTIAAAATITATVTATVTGPLTIVATTVSVAATVPGTSTDHLGVQINQKKQKVGKTYMGGAKRLRGCRKTSFLPTLPLMKRVFQCVLVVPTDAYV