CuGenDBv2

Gene ID	Moc06g18510
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Genome location	chr6:14457756..14458471
RNA-Seq Expression	Moc06g18510
Synteny	Moc06g18510
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily IPR023780 - Chromo domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-58

64.36

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER RK  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

4.2e-58

63.83

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

KAA0063945.1 reverse transcriptase [Cucumis melo var. makuwa]

8.5e-59

64.36

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A D +   +    RD+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

4.2e-58

63.83

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

4.2e-58

63.83

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUK4 Reverse transcriptase

9.1e-59

64.36

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER RK  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

A0A5A7UXR6 Reverse transcriptase

2.0e-58

63.83

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

A0A5A7VDI3 Reverse transcriptase

4.1e-59

64.36

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A D +   +    RD+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

A0A5D3C4R1 Reverse transcriptase

2.0e-58

63.83

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

A0A5D3DBE0 Reverse transcriptase

2.0e-58

63.83

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Query:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH
        W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH
Subjt:  WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYH

Query:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV
         D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+QLTGTST+
Subjt:  PDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTGGCTCAATTCTGTTTTAACGGCCAGACAAGTTCTTCAACAGGAAAGAGCCCCTTTGAGATTGTGTGCGGAAGACAGCCGTCTATGCCACATATTCTTGACC
ACCCGTGACAAAGTTCTTATCAAGCTGAGGCCAGAACAGATTCGTTTCCGAGGACGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCCGTGGAAGTCGTT
AAGAAGGTGGGGAGTGTCTCGTATAAGGTGGTGTTACCCGCTTGGATGAAGATCCACCCGGTAATCCATGTGAGCAATTTAAAACCTTACCATCCCGACCTTGAG
GATGACGAACGCAATGCTGTTGTGCGGCCCGCCATCGACTTCAAACGGAAGGAAGACAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGA
CCCGTTCGAAAAGTTCGAGAATTCCTCGTTAAATGGAAGGACCTACCCGATGCAGAGACCAGCTGGAAACGAGAAGAAGACCTTGAAGCCTGGAAGACGAAGATC
GAGGACTTCAAGTTGCAGCAGTTGACAGGGACGTCAACCGTTTAA

mRNA sequence

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Protein sequence

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MWLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLE
DDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

Moc06g18510 (gene) of Bitter gourd (OHB3-1) v2 genome