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Moc06g18560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g18560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:14475331..14477917
RNA-Seq ExpressionMoc06g18560
SyntenyMoc06g18560
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]1.9e-2146.84Show/hide
Query:  QHAQSRAHHEGDVCRDDTGQSDRSPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKA
        Q A +R+  E  V R+D     R     P     PE GED+                  +Y+ +  DLR++L ++KR +S   G SP CS R  NS+ +A
Subjt:  QHAQSRAHHEGDVCRDDTGQSDRSPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKA

Query:  QSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL
        +S Y P+TPE VITREEFD +K +FD QVEALKAKCEKKES FDDG++GE PFTSD+L
Subjt:  QSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]1.9e-3259.26Show/hide
Query:  SPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKH
        SPS  PG       GE     + P DREPI N+  +DYSL+D+D+RK+L +KK++ASR    S   SR++SNS+LKAQSKY P+ PEA+ITREEFDLMKH
Subjt:  SPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKH

Query:  RFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL
        +F EQVEALKA+CEKKE  FD+G++GE PFT D+L
Subjt:  RFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL

XP_022155128.1 uncharacterized protein LOC111022267 [Momordica charantia]1.2e-1854.29Show/hide
Query:  TNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPF
        +  E  +Y+ +  DLR++L ++KR +S   G SP  S R  NS+ +A+S Y P+TP+ VITREEFD +K +FD QVEALKA CEKKES FDDG++GE PF
Subjt:  TNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPF

Query:  TSDVL
        T D+L
Subjt:  TSDVL

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]1.2e-3466.94Show/hide
Query:  GEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCE
        GE     + P +REPI N+E +DYSL+D+DLRK+L DKK+KAS     S   SR +SNS+LKAQSKY P+ PEAVI REEFDLMKHRFDEQVEALKA+CE
Subjt:  GEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCE

Query:  KKESPFDDGEMGEPPFTSDVL
        KKESPFDD ++GE PFTSD++
Subjt:  KKESPFDDGEMGEPPFTSDVL

XP_022157897.1 uncharacterized protein LOC111024503 [Momordica charantia]1.7e-2577.78Show/hide
Query:  KASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL
        +ASR    SP  SR +SNSD KAQSKY P+TPEAVITREEFDLMKHRFDEQVEALKAKCEKKE  FDDG++GE PFTSD+L
Subjt:  KASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL

TrEMBL top hitse value%identityAlignment
A0A6J1DDW5 uncharacterized protein LOC1110196349.3e-2246.84Show/hide
Query:  QHAQSRAHHEGDVCRDDTGQSDRSPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKA
        Q A +R+  E  V R+D     R     P     PE GED+                  +Y+ +  DLR++L ++KR +S   G SP CS R  NS+ +A
Subjt:  QHAQSRAHHEGDVCRDDTGQSDRSPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKA

Query:  QSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL
        +S Y P+TPE VITREEFD +K +FD QVEALKAKCEKKES FDDG++GE PFTSD+L
Subjt:  QSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL

A0A6J1DNM4 Ribonuclease H9.0e-3359.26Show/hide
Query:  SPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKH
        SPS  PG       GE     + P DREPI N+  +DYSL+D+D+RK+L +KK++ASR    S   SR++SNS+LKAQSKY P+ PEA+ITREEFDLMKH
Subjt:  SPSKVPGGDDMPEDGEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKH

Query:  RFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL
        +F EQVEALKA+CEKKE  FD+G++GE PFT D+L
Subjt:  RFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL

A0A6J1DPC9 uncharacterized protein LOC1110222805.6e-3566.94Show/hide
Query:  GEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCE
        GE     + P +REPI N+E +DYSL+D+DLRK+L DKK+KAS     S   SR +SNS+LKAQSKY P+ PEAVI REEFDLMKHRFDEQVEALKA+CE
Subjt:  GEDQDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCE

Query:  KKESPFDDGEMGEPPFTSDVL
        KKESPFDD ++GE PFTSD++
Subjt:  KKESPFDDGEMGEPPFTSDVL

A0A6J1DVR0 uncharacterized protein LOC1110245038.2e-2677.78Show/hide
Query:  KASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL
        +ASR    SP  SR +SNSD KAQSKY P+TPEAVITREEFDLMKHRFDEQVEALKAKCEKKE  FDDG++GE PFTSD+L
Subjt:  KASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGEPPFTSDVL

A0A6J1DZJ1 uncharacterized protein LOC1110257381.6e-1836.12Show/hide
Query:  NSANTTERRGLNADNGTHRDLDARI-----------------------ELPPAHPRPSKVGVGQHAQSRAHHEGDVCRDDTGQSDRSPSKVPGGDDMPED
        +S NT +RR L A++G  R++ A +                       +L PAHP+P K   G+   SR    G          D    ++       E 
Subjt:  NSANTTERRGLNADNGTHRDLDARI-----------------------ELPPAHPRPSKVGVGQHAQSRAHHEGDVCRDDTGQSDRSPSKVPGGDDMPED

Query:  GEDQDLPLHPDDREPI----TNNERIDYSLKDH--DLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEA
           Q L +     E +      +   D + +D   DLR +L  +KR +S   G SP CS  + NS+ +A+S Y PV PE VITREEFD +K +FD QVE 
Subjt:  GEDQDLPLHPDDREPI----TNNERIDYSLKDH--DLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEA

Query:  LKAKCEKKESPFDDGEMGEPPFTSDVL
        LKA+CE K S FDDG++GE PFTSD+L
Subjt:  LKAKCEKKESPFDDGEMGEPPFTSDVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCGGGTGCGCGCGAGGTAACACCTTGTGAGGTTAGCTCGCTGTTGGCGTGGTGTAGGCGCACGCATGGAGTGCGCTTTTGTGCGCACATGGGGTGTGTCCATGT
GAGGTTGGTGTGCACACTTTATGGAGTTGAGTGTGCAGTGCTGTTCTCCTCTTCTCATGATGTGGTTCCAAGGACTTGGACAGAGATTGGCTGTCAGAAGAGATGGTTTA
AGAAAATTGTTCAACAAAGCTTCTCCTCGGAACCTGCCGAGGAAGGAAGTTCATTACCCCTAATAGAATTGCAACATCGAACGTATCCGAGTTCGACCAACCCGAGCCCG
ACAAGTCCGACCTCAAAACCGACCAAGGTCCTTCCGTCGTCTTTCGCGTCGGAGTGGGGACCGGATTCGAGTTCGAGATCTGTTGCAGCGAACTCTGCCAATACAACAGA
ACGGAGAGGTTTGAACGCTGACAATGGCACTCACCGTGACCTCGACGCCAGAATAGAATTACCTCCTGCTCACCCTAGACCTTCAAAAGTGGGAGTTGGACAACATGCGC
AATCGAGGGCGCACCATGAAGGAGATGTATGCCGAGATGACACGGGCCAATCGGATAGATCTCCCTCCAAAGTCCCAGGCGGGGATGACATGCCTGAAGACGGAGAGGAT
CAAGATCTACCTCTCCACCCTGATGACCGTGAACCCATCACCAATAACGAACGGATTGACTATAGCCTGAAGGATCACGATCTCAGAAAGTACCTCGTCGACAAGAAGAG
GAAAGCCTCAAGGGGTCACGGGGTCTCTCCGCCCTGCTCTCGAAGATACTCAAACTCTGACCTCAAAGCTCAGTCGAAGTACACACCTGTGACACCGGAGGCCGTGATTA
CAAGGGAAGAGTTTGACCTGATGAAACACAGATTTGATGAGCAGGTCGAGGCATTGAAGGCTAAATGTGAGAAAAAGGAGAGTCCATTTGATGATGGTGAGATGGGCGAG
CCGCCATTCACCTCAGACGTCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCGGGTGCGCGCGAGGTAACACCTTGTGAGGTTAGCTCGCTGTTGGCGTGGTGTAGGCGCACGCATGGAGTGCGCTTTTGTGCGCACATGGGGTGTGTCCATGT
GAGGTTGGTGTGCACACTTTATGGAGTTGAGTGTGCAGTGCTGTTCTCCTCTTCTCATGATGTGGTTCCAAGGACTTGGACAGAGATTGGCTGTCAGAAGAGATGGTTTA
AGAAAATTGTTCAACAAAGCTTCTCCTCGGAACCTGCCGAGGAAGGAAGTTCATTACCCCTAATAGAATTGCAACATCGAACGTATCCGAGTTCGACCAACCCGAGCCCG
ACAAGTCCGACCTCAAAACCGACCAAGGTCCTTCCGTCGTCTTTCGCGTCGGAGTGGGGACCGGATTCGAGTTCGAGATCTGTTGCAGCGAACTCTGCCAATACAACAGA
ACGGAGAGGTTTGAACGCTGACAATGGCACTCACCGTGACCTCGACGCCAGAATAGAATTACCTCCTGCTCACCCTAGACCTTCAAAAGTGGGAGTTGGACAACATGCGC
AATCGAGGGCGCACCATGAAGGAGATGTATGCCGAGATGACACGGGCCAATCGGATAGATCTCCCTCCAAAGTCCCAGGCGGGGATGACATGCCTGAAGACGGAGAGGAT
CAAGATCTACCTCTCCACCCTGATGACCGTGAACCCATCACCAATAACGAACGGATTGACTATAGCCTGAAGGATCACGATCTCAGAAAGTACCTCGTCGACAAGAAGAG
GAAAGCCTCAAGGGGTCACGGGGTCTCTCCGCCCTGCTCTCGAAGATACTCAAACTCTGACCTCAAAGCTCAGTCGAAGTACACACCTGTGACACCGGAGGCCGTGATTA
CAAGGGAAGAGTTTGACCTGATGAAACACAGATTTGATGAGCAGGTCGAGGCATTGAAGGCTAAATGTGAGAAAAAGGAGAGTCCATTTGATGATGGTGAGATGGGCGAG
CCGCCATTCACCTCAGACGTCTTGTAG
Protein sequenceShow/hide protein sequence
MQAGAREVTPCEVSSLLAWCRRTHGVRFCAHMGCVHVRLVCTLYGVECAVLFSSSHDVVPRTWTEIGCQKRWFKKIVQQSFSSEPAEEGSSLPLIELQHRTYPSSTNPSP
TSPTSKPTKVLPSSFASEWGPDSSSRSVAANSANTTERRGLNADNGTHRDLDARIELPPAHPRPSKVGVGQHAQSRAHHEGDVCRDDTGQSDRSPSKVPGGDDMPEDGED
QDLPLHPDDREPITNNERIDYSLKDHDLRKYLVDKKRKASRGHGVSPPCSRRYSNSDLKAQSKYTPVTPEAVITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGE
PPFTSDVL