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Moc06g18660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g18660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr6:14542874..14547360
RNA-Seq ExpressionMoc06g18660
SyntenyMoc06g18660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.1e-0534.59Show/hide
Query:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL
        L +LE LDE   RR  +   +LL     + +  V++ D PT D    T    + + S  P T +A T        ID + + KDNK +  HL NHM+D +
Subjt:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL

Query:  FDLFVSER----------SRYGGDEVGKHTSLV
        FDLFV ++          SRYGGD+ G+   +V
Subjt:  FDLFVSER----------SRYGGDEVGKHTSLV

XP_008445782.1 PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]5.1e-0534.59Show/hide
Query:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL
        L +LE LDE   RR  +   +LL     + +  V++ D PT D    T    + + S  P T +A T        ID + + KDNK +  HL NHM+D +
Subjt:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL

Query:  FDLFVSER----------SRYGGDEVGKHTSLV
        FDLFV ++          SRYGGD+ G+   +V
Subjt:  FDLFVSER----------SRYGGDEVGKHTSLV

XP_022150382.1 uncharacterized protein LOC111018559 [Momordica charantia]1.8e-0546.15Show/hide
Query:  ATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV
        AT  T+   +D F+KDNK I+ HL NHMN+SLFD FV+++          SRYGGD+ G+   +V
Subjt:  ATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]2.3e-0547.54Show/hide
Query:  TSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV
        ++ +++D FEKDNK I  HL NHMND LFDLFV ++          SRYGGD+ G+   +V
Subjt:  TSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV

XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]9.3e-0738.61Show/hide
Query:  APVLIAAVVSADQPTVDATQPVIEVDQSIVPATQLAATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSL
        A    AA V+A   T   T P      ++  +   A    ++ I++D FEKDNK +  HL NHMNDSLFDLFV ++          SRYGGD+ G+   +
Subjt:  APVLIAAVVSADQPTVDATQPVIEVDQSIVPATQLAATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSL

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A1S3BE75 uncharacterized protein LOC1034887072.5e-0534.59Show/hide
Query:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL
        L +LE LDE   RR  +   +LL     + +  V++ D PT D    T    + + S  P T +A T        ID + + KDNK +  HL NHM+D +
Subjt:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL

Query:  FDLFVSER----------SRYGGDEVGKHTSLV
        FDLFV ++          SRYGGD+ G+   +V
Subjt:  FDLFVSER----------SRYGGDEVGKHTSLV

A0A5D3CM58 Ty1-copia retrotransposon protein2.5e-0534.59Show/hide
Query:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL
        L +LE LDE   RR  +   +LL     + +  V++ D PT D    T    + + S  P T +A T        ID + + KDNK +  HL NHM+D +
Subjt:  LQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVD---ATQPVIEVDQSIVPATQLAATVAT---SPIDSDNFEKDNKMIYSHLFNHMNDSL

Query:  FDLFVSER----------SRYGGDEVGKHTSLV
        FDLFV ++          SRYGGD+ G+   +V
Subjt:  FDLFVSER----------SRYGGDEVGKHTSLV

A0A6J1DAK7 uncharacterized protein LOC1110185598.5e-0646.15Show/hide
Query:  ATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV
        AT  T+   +D F+KDNK I+ HL NHMN+SLFD FV+++          SRYGGD+ G+   +V
Subjt:  ATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV

A0A6J1DHJ4 uncharacterized protein LOC1110211471.1e-0547.54Show/hide
Query:  TSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV
        ++ +++D FEKDNK I  HL NHMND LFDLFV ++          SRYGGD+ G+   +V
Subjt:  TSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSLV

A0A6J1DWN1 uncharacterized protein LOC1110251974.5e-0738.61Show/hide
Query:  APVLIAAVVSADQPTVDATQPVIEVDQSIVPATQLAATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSL
        A    AA V+A   T   T P      ++  +   A    ++ I++D FEKDNK +  HL NHMNDSLFDLFV ++          SRYGGD+ G+   +
Subjt:  APVLIAAVVSADQPTVDATQPVIEVDQSIVPATQLAATVATSPIDSDNFEKDNKMIYSHLFNHMNDSLFDLFVSER----------SRYGGDEVGKHTSL

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCGGCAAAAATGGACTGCAAACGTGAAAATGGTGAGAATCAATTACAACGGCTGGAGATTTTGGACGAGGAATTTGTAAGAAGAAGAAGAGAAAATGGA
GGTCGATTATTATGTCCTCGTGCACCAGTTCTCATTGCTGCTGTTGTGTCTGCTGATCAGCCTACTGTTGATGCTACTCAACCAGTTATCGAGGTCGATCAATCC
ATCGTTCCTGCAACTCAGCTAGCTGCCACTGTTGCTACTTCACCCATCGATTCTGACAATTTTGAGAAAGACAATAAGATGATCTATAGTCATCTCTTCAACCAT
ATGAACGACTCCCTCTTTGATCTATTCGTATCTGAAAGATCCAGATATGGAGGGGACGAGGTAGGAAAACATACGTCGTTGGTAAGTGGCTATAATTTCAAATGT
CGGATGACAAAGCTGTCATGGACCAGGTGCACGAGACTCTACGTCGGCAAGTGTGTTTTTATAGGCAACTCGGCAACTGTTGAAGTGTTGGATCGGTATGGCAAC
CCTGGAGGGGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCGGCAAAAATGGACTGCAAACGTGAAAATGGTGAGAATCAATTACAACGGCTGGAGATTTTGGACGAGGAATTTGTAAGAAGAAGAAGAGAAAATGGA
GGTCGATTATTATGTCCTCGTGCACCAGTTCTCATTGCTGCTGTTGTGTCTGCTGATCAGCCTACTGTTGATGCTACTCAACCAGTTATCGAGGTCGATCAATCC
ATCGTTCCTGCAACTCAGCTAGCTGCCACTGTTGCTACTTCACCCATCGATTCTGACAATTTTGAGAAAGACAATAAGATGATCTATAGTCATCTCTTCAACCAT
ATGAACGACTCCCTCTTTGATCTATTCGTATCTGAAAGATCCAGATATGGAGGGGACGAGGTAGGAAAACATACGTCGTTGGTAAGTGGCTATAATTTCAAATGT
CGGATGACAAAGCTGTCATGGACCAGGTGCACGAGACTCTACGTCGGCAAGTGTGTTTTTATAGGCAACTCGGCAACTGTTGAAGTGTTGGATCGGTATGGCAAC
CCTGGAGGGGGGTGA
Protein sequenceShow/hide protein sequence
MDAAKMDCKRENGENQLQRLEILDEEFVRRRRENGGRLLCPRAPVLIAAVVSADQPTVDATQPVIEVDQSIVPATQLAATVATSPIDSDNFEKDNKMIYSHLFNH
MNDSLFDLFVSERSRYGGDEVGKHTSLVSGYNFKCRMTKLSWTRCTRLYVGKCVFIGNSATVEVLDRYGNPGGG