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Moc06g18980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g18980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr6:14782917..14791561
RNA-Seq ExpressionMoc06g18980
SyntenyMoc06g18980
Gene Ontology termsGO:0016829 - lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]2.7e-3468.5Show/hide
Query:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYDCQEL
        AS VDHLPLKTLAI+PSL L LYA VKYSSQLNDLQLLHGNH+EHA           V+ +W               RILGSNESSL LVVSDYYDCQEL
Subjt:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYDCQEL

Query:  VGLSWKAEVHVMNYAWGSPLLTDKEYG
        VGLSWKAE+ VMNYA GSPLLTDKE G
Subjt:  VGLSWKAEVHVMNYAWGSPLLTDKEYG
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]9.0e-3077.08Show/hide
Query:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYD
        ASC+ HLPLKTLAILPSL L +YA VKYSSQLNDLQLL GNH+  AGRTT DKVV + LRV EL+DYLEIIG TT+ RILGS+ SSLALV SDYYD
Subjt:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYD
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like1.3e-3468.5Show/hide
Query:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYDCQEL
        AS VDHLPLKTLAI+PSL L LYA VKYSSQLNDLQLLHGNH+EHA           V+ +W               RILGSNESSL LVVSDYYDCQEL
Subjt:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYDCQEL

Query:  VGLSWKAEVHVMNYAWGSPLLTDKEYG
        VGLSWKAE+ VMNYA GSPLLTDKE G
Subjt:  VGLSWKAEVHVMNYAWGSPLLTDKEYG
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein4.4e-3077.08Show/hide
Query:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYD
        ASC+ HLPLKTLAILPSL L +YA VKYSSQLNDLQLL GNH+  AGRTT DKVV + LRV EL+DYLEIIG TT+ RILGS+ SSLALV SDYYD
Subjt:  ASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELMDYLEIIGTTTRYRILGSNESSLALVVSDYYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGCGGCCTGTGTATTGTCGGGGTCGCCGGCCTGGGTGAAGAAGAAGAGAAGGTTAGACTCAAAGCAGGCTAGGCTCAAGGTTTTACAGCTCTGTTTTAGATTCTC
ACCTCAAAAGACATCCCTACCCCATGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCCTCATTAGCACTTACACTTTATGCTTCAGTGAAGTACA
GTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTATGGGAGCTAATG
GATTACCTTGAAATAATTGGGACAACAACTCGGTATAGGATATTGGGATCAAATGAAAGCTCTCTCGCTTTAGTTGTCTCCGACTACTATGATTGTCAGGAGCTTGTTGG
CCTTTCTTGGAAAGCTGAGGTTCATGTGATGAATTATGCTTGGGGAAGCCCTCTATTGACTGACAAGGAGTATGGTCGACTTGAGTGGAGAATTTCATGCGCCTGCACGG
GAACCGAAATTCCACGAAGGTCACACTACTCAGTCTCCGATCTAATCTTAAGGGTAAAGCCTGGCGGAGTTGCCAAGCTGTCGCAACGTCATCGCGACGCGGAGCGACCG
ACGTCATCCCCTGACGGGTCTCTTTCGAGATTAGGGTGTGCCCGCGAGTCTGAAAACTGTGAAGGAGCACTCGAGGTCGAAGTCAGGTGGTCGGTGATCCGTGCGTCGGT
TGTAGAAGTTTTGCGCCGGACTACTATGGTGCAGGTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGCGGCCTGTGTATTGTCGGGGTCGCCGGCCTGGGTGAAGAAGAAGAGAAGGTTAGACTCAAAGCAGGCTAGGCTCAAGGTTTTACAGCTCTGTTTTAGATTCTC
ACCTCAAAAGACATCCCTACCCCATGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCCTCATTAGCACTTACACTTTATGCTTCAGTGAAGTACA
GTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTATGGGAGCTAATG
GATTACCTTGAAATAATTGGGACAACAACTCGGTATAGGATATTGGGATCAAATGAAAGCTCTCTCGCTTTAGTTGTCTCCGACTACTATGATTGTCAGGAGCTTGTTGG
CCTTTCTTGGAAAGCTGAGGTTCATGTGATGAATTATGCTTGGGGAAGCCCTCTATTGACTGACAAGGAGTATGGTCGACTTGAGTGGAGAATTTCATGCGCCTGCACGG
GAACCGAAATTCCACGAAGGTCACACTACTCAGTCTCCGATCTAATCTTAAGGGTAAAGCCTGGCGGAGTTGCCAAGCTGTCGCAACGTCATCGCGACGCGGAGCGACCG
ACGTCATCCCCTGACGGGTCTCTTTCGAGATTAGGGTGTGCCCGCGAGTCTGAAAACTGTGAAGGAGCACTCGAGGTCGAAGTCAGGTGGTCGGTGATCCGTGCGTCGGT
TGTAGAAGTTTTGCGCCGGACTACTATGGTGCAGGTTGTCTGA
Protein sequenceShow/hide protein sequence
MCAACVLSGSPAWVKKKRRLDSKQARLKVLQLCFRFSPQKTSLPHASCVDHLPLKTLAILPSLALTLYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVWELM
DYLEIIGTTTRYRILGSNESSLALVVSDYYDCQELVGLSWKAEVHVMNYAWGSPLLTDKEYGRLEWRISCACTGTEIPRRSHYSVSDLILRVKPGGVAKLSQRHRDAERP
TSSPDGSLSRLGCARESENCEGALEVEVRWSVIRASVVEVLRRTTMVQVV