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Moc06g19080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g19080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr6:14863939..14864495
RNA-Seq ExpressionMoc06g19080
SyntenyMoc06g19080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.8e-2437.97Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    +ET   +     +    TW++NDGLLTSWLLG++ E+++ L++GT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK                                         + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.7e-2538.5Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    KET   +     +    TW++NDGLLTSWLLG++ E+++ L++GT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK                                         + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

RVW77775.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]1.4e-2643.48Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    +ET   +     +    TW++NDGLLTSWLLG++ E+++ L++G +TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK---------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK               + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK---------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

RVW93768.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]8.2e-2437.43Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    +ET   +     +    TW++NDGLLTSWLLG++ ++++ L++GT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK                                         + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]1.5e-3347.59Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTANS-----------
        +LIS+KLN+S YLL KSQVLPLIRTLG+EHHL ++ P + E K ++  +   TQ  TW NNDGLLTSWLLGIIAED+L L+EGT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTANS-----------

Query:  ---------NE----------------------------------KVSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
                 NE                                   ++KVFH+AR LG  Y +FR AMLSK PYPSYNQF+LALKAH
Subjt:  ---------NE----------------------------------KVSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

TrEMBL top hitse value%identityAlignment
A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE11.4e-2437.97Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    +ET   +     +    TW++NDGLLTSWLLG++ E+++ L++GT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK                                         + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-2538.5Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    KET   +     +    TW++NDGLLTSWLLG++ E+++ L++GT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK                                         + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

A0A438GZV0 Retrovirus-related Pol polyprotein from transposon RE26.6e-2743.48Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    +ET   +     +    TW++NDGLLTSWLLG++ E+++ L++G +TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK---------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK               + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK---------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

A0A438IAM2 Retrovirus-related Pol polyprotein from transposon RE14.0e-2437.43Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------
        +L+SIKLN S  LL +SQVLPL+R+LG+ HHL+++    +ET   +     +    TW++NDGLLTSWLLG++ ++++ L++GT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTA-------------

Query:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
         + EK                                         + KVF +A+ LG+ Y +FR+AMLSKPPYPSYNQF+LAL+ H
Subjt:  NSNEK-----------------------------------------VSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

A0A6J1DMG5 uncharacterized protein LOC1110213797.3e-3447.59Show/hide
Query:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTANS-----------
        +LIS+KLN+S YLL KSQVLPLIRTLG+EHHL ++ P + E K ++  +   TQ  TW NNDGLLTSWLLGIIAED+L L+EGT+TA             
Subjt:  NLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTANS-----------

Query:  ---------NE----------------------------------KVSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH
                 NE                                   ++KVFH+AR LG  Y +FR AMLSK PYPSYNQF+LALKAH
Subjt:  ---------NE----------------------------------KVSKVFHIARALGSTYNEFRIAMLSKPPYPSYNQFILALKAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAACCTCATATCCATCAAATTGAACACTTCCAAATATTTACTTGGGAAGTCACAAGTGTTGCCACTCATCAGGACTCTTGGAGTAGAGCATCACCTCACAAAAGA
TCCACCAGAGATCAAGGAAACCAAAGATGAAAAAGAAATTGCAGAAATCAACACTCAATTCAACACATGGACCAACAATGATGGCCTTCTTACCTCATGGCTTCTTGGAA
TCATTGCTGAAGATTTGTTGGCTTTGATTGAAGGTACTGATACTGCAAATAGCAATGAAAAAGTATCTAAAGTCTTCCATATTGCAAGAGCACTAGGGAGCACTTATAAC
GAGTTCAGAATAGCCATGTTATCCAAACCTCCTTATCCCTCGTACAATCAATTTATTCTTGCCTTGAAAGCTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAACCTCATATCCATCAAATTGAACACTTCCAAATATTTACTTGGGAAGTCACAAGTGTTGCCACTCATCAGGACTCTTGGAGTAGAGCATCACCTCACAAAAGA
TCCACCAGAGATCAAGGAAACCAAAGATGAAAAAGAAATTGCAGAAATCAACACTCAATTCAACACATGGACCAACAATGATGGCCTTCTTACCTCATGGCTTCTTGGAA
TCATTGCTGAAGATTTGTTGGCTTTGATTGAAGGTACTGATACTGCAAATAGCAATGAAAAAGTATCTAAAGTCTTCCATATTGCAAGAGCACTAGGGAGCACTTATAAC
GAGTTCAGAATAGCCATGTTATCCAAACCTCCTTATCCCTCGTACAATCAATTTATTCTTGCCTTGAAAGCTCATTAA
Protein sequenceShow/hide protein sequence
MCNLISIKLNTSKYLLGKSQVLPLIRTLGVEHHLTKDPPEIKETKDEKEIAEINTQFNTWTNNDGLLTSWLLGIIAEDLLALIEGTDTANSNEKVSKVFHIARALGSTYN
EFRIAMLSKPPYPSYNQFILALKAH