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Moc06g19230 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g19230
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr6:14966948..14971049
RNA-Seq ExpressionMoc06g19230
SyntenyMoc06g19230
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]6.3e-1454.08Show/hide
Query:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD
        + AS + HLPLKTLAI+PSLELA+YALVKYSSQLNDLQLL GNHS                         E   +    RILGS+ SSL LV SDYYD
Subjt:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]4.8e-4696.15Show/hide
Query:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
        + ASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
Subjt:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR

Query:  VMLA
        V  A
Subjt:  VMLA
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like3.0e-1454.08Show/hide
Query:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD
        + AS + HLPLKTLAI+PSLELA+YALVKYSSQLNDLQLL GNHS                         E   +    RILGS+ SSL LV SDYYD
Subjt:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein2.3e-4696.15Show/hide
Query:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
        + ASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
Subjt:  ADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR

Query:  VMLA
        V  A
Subjt:  VMLA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATTACAAAAATTCCCCAAGCTTCCGAGCTTGGCTCAGATGGAAGGATGACCTTGAGGATGAGCTGAAATGTGCTGATGCTTCATGTATTCACCATCTTCCTTT
GAAAACTTTAGCCATCCTACCTTCATTAGAACTTGCAATTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAACTCCTGCGTGGTAATCACAGTGGACTTG
CGGGTCGTACCACTTTTGATAAGGTGGTTGCAATAGCTCTACGCGTACGGGAACTAATAGATTACCTTGAAATAATTGGGATAACAACTCAGTGTAGGATATTGGGATCG
GATGGAAGCTCTCTCGCTTTAGTTGCCTCCGACTACTATGATTATCGGGTAATGTTGGCAACCTTAGTCGTGGGTCATACTGTAGAGCCAATGAGTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATTACAAAAATTCCCCAAGCTTCCGAGCTTGGCTCAGATGGAAGGATGACCTTGAGGATGAGCTGAAATGTGCTGATGCTTCATGTATTCACCATCTTCCTTT
GAAAACTTTAGCCATCCTACCTTCATTAGAACTTGCAATTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAACTCCTGCGTGGTAATCACAGTGGACTTG
CGGGTCGTACCACTTTTGATAAGGTGGTTGCAATAGCTCTACGCGTACGGGAACTAATAGATTACCTTGAAATAATTGGGATAACAACTCAGTGTAGGATATTGGGATCG
GATGGAAGCTCTCTCGCTTTAGTTGCCTCCGACTACTATGATTATCGGGTAATGTTGGCAACCTTAGTCGTGGGTCATACTGTAGAGCCAATGAGTTTATAG
Protein sequenceShow/hide protein sequence
MFDYKNSPSFRAWLRWKDDLEDELKCADASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGS
DGSSLALVASDYYDYRVMLATLVVGHTVEPMSL