; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g19760 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g19760
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr6:15509345..15510160
RNA-Seq ExpressionMoc06g19760
SyntenyMoc06g19760
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052269.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-9666.16Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+LVEFDF+FEH+ G + QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ L KAGKT                     +G+L+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+PT K CS EMT
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-9666.16Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+L EFDF+FEH+ G S QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ LAKAGKT                     +GNL+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+P  K CS E T
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-9565.78Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+L EFDF+FEH+ G S QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ LAKAGKT                     +G L+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+P  K CS E T
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-9665.78Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+L EFDF+FEH+ G + QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ L KAGKT                     +G+L+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+PT K CS EMT
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]1.3e-9966.92Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLR WRQYLLGS+FVVKTDNS+ CHFF+Q KL++KQA+WQE L EFDF+FEH+ G+S QAADALSRK EHAALCMLAH+ +SK+ GS+ + IK 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
        HL  DP+A+ +++LAKAGKT                     +G L+K L++ECHDT+WAGH GWQRTYAL+KKGY+WPN++DD+MQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K++GLLE L VP+RPWESVSLDFITHL KV E++ ILVIV RFSKYATF+PTPK+CS E+T
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

TrEMBL top hitse value%identityAlignment
A0A5A7UFL8 Reverse transcriptase5.0e-9766.16Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+LVEFDF+FEH+ G + QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ L KAGKT                     +G+L+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+PT K CS EMT
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

A0A5A7UY33 Reverse transcriptase1.5e-9666.16Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+L EFDF+FEH+ G S QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ LAKAGKT                     +GNL+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+P  K CS E T
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

A0A5D3BQE4 Reverse transcriptase1.1e-9665.78Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+L EFDF+FEH+ G + QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ L KAGKT                     +G+L+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+PT K CS EMT
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

A0A5D3BRZ6 Reverse transcriptase5.5e-9665.78Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+L EFDF+FEH+ G S QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ LAKAGKT                     +G L+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+P  K CS E T
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

A0A5D3C4R1 Reverse transcriptase5.5e-9665.78Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT
        MLAVVHCLRAWRQYLLGS FVVKTDNS+ CHFF Q KL+SKQA+WQE+L EFDF+FEH+ G S QAADALSRK EHAA+C+LAHL+ S++ GSV + ++ 
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKT

Query:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE
         L+ D  AQ ++ LAKAGKT                     +G L+K L+ ECHDT+WAGH GWQRTYALLKKGY+WPN++DDVMQYTKTCLI QQDKVE
Subjt:  HLKDDPTAQTIIQLAKAGKT---------------------SGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVE

Query:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + K+AGLL+ L VP+RPWESVS+DFITHL KV +FE ILVI+ RFSKYATF+P  K CS E T
Subjt:  RTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.6e-1827.27Show/hide
Query:  MLAVVHCLRAWRQYLLGS--KFVVKTDNSS-ICHFFNQSKLSSKQ-AQWQEYLVEFDFQFEHRPGRSTQAADALSR----------KSEHAALCMLAHLK
        MLA++  L+ WR YL  +   F + TD+ + I    N+S+  +K+ A+WQ +L +F+F+  +RPG +   ADALSR           SE  ++  +  + 
Subjt:  MLAVVHCLRAWRQYLLGS--KFVVKTDNSS-ICHFFNQSKLSSKQ-AQWQEYLVEFDFQFEHRPGRSTQAADALSR----------KSEHAALCMLAHLK

Query:  -ASKLRGSVYEAIKTHLK-------DDPTAQTIIQLAKAG-----------KTSGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYT
             +  V        K       +D   +  IQL K G                L + ++++ H+     H G +    ++ + + W  ++  + +Y 
Subjt:  -ASKLRGSVYEAIKTHLK-------DDPTAQTIIQLAKAG-----------KTSGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYT

Query:  KTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + C   Q +K    K  G L+ +    RPWES+S+DFIT L +   +  + V+V RFSK A  VP  K  + E T
Subjt:  KTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

P0CT41 Transposon Tf2-12 polyprotein2.6e-1827.27Show/hide
Query:  MLAVVHCLRAWRQYLLGS--KFVVKTDNSS-ICHFFNQSKLSSKQ-AQWQEYLVEFDFQFEHRPGRSTQAADALSR----------KSEHAALCMLAHLK
        MLA++  L+ WR YL  +   F + TD+ + I    N+S+  +K+ A+WQ +L +F+F+  +RPG +   ADALSR           SE  ++  +  + 
Subjt:  MLAVVHCLRAWRQYLLGS--KFVVKTDNSS-ICHFFNQSKLSSKQ-AQWQEYLVEFDFQFEHRPGRSTQAADALSR----------KSEHAALCMLAHLK

Query:  -ASKLRGSVYEAIKTHLK-------DDPTAQTIIQLAKAG-----------KTSGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYT
             +  V        K       +D   +  IQL K G                L + ++++ H+     H G +    ++ + + W  ++  + +Y 
Subjt:  -ASKLRGSVYEAIKTHLK-------DDPTAQTIIQLAKAG-----------KTSGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYT

Query:  KTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + C   Q +K    K  G L+ +    RPWES+S+DFIT L +   +  + V+V RFSK A  VP  K  + E T
Subjt:  KTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.2e-2027.4Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSR----------------------KSEHAA
        +L ++  L  +R  L G  F ++TD+ S+    N+++ + +  +W + L  +DF  E+  G     ADA+SR                      KS+   
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSR----------------------KSEHAA

Query:  LCMLAHLK-------------ASKLRGSVYEAIKTHLKDDPTAQTIIQLAKAGKTSGNLKKLLMEECHD-TMWAGHAGWQRTYALLKKGYYWPNLQDDVM
          +L H+K             A +      E  +T  K+      +I            +  +M   HD T++ GH G   T A +   YYWP LQ  ++
Subjt:  LCMLAHLK-------------ASKLRGSVYEAIKTHLKDDPTAQTIIQLAKAGKTSGNLKKLLMEECHD-TMWAGHAGWQRTYALLKKGYYWPNLQDDVM

Query:  QYTKTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKV-EEFEDILVIVHRFSKYATFVPTPK-MCSTEMTD
        QY +TC+  Q  K  R ++ GLL+ L +    W  +S+DF+T L         ILV+V RFSK A F+ T K + +T++ D
Subjt:  QYTKTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKV-EEFEDILVIVHRFSKYATFVPTPK-MCSTEMTD

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.2e-2027.4Show/hide
Query:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSR----------------------KSEHAA
        +L ++  L  +R  L G  F ++TD+ S+    N+++ + +  +W + L  +DF  E+  G     ADA+SR                      KS+   
Subjt:  MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSR----------------------KSEHAA

Query:  LCMLAHLK-------------ASKLRGSVYEAIKTHLKDDPTAQTIIQLAKAGKTSGNLKKLLMEECHD-TMWAGHAGWQRTYALLKKGYYWPNLQDDVM
          +L H+K             A +      E  +T  K+      +I            +  +M   HD T++ GH G   T A +   YYWP LQ  ++
Subjt:  LCMLAHLK-------------ASKLRGSVYEAIKTHLKDDPTAQTIIQLAKAGKTSGNLKKLLMEECHD-TMWAGHAGWQRTYALLKKGYYWPNLQDDVM

Query:  QYTKTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKV-EEFEDILVIVHRFSKYATFVPTPK-MCSTEMTD
        QY +TC+  Q  K  R ++ GLL+ L +    W  +S+DF+T L         ILV+V RFSK A F+ T K + +T++ D
Subjt:  QYTKTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKV-EEFEDILVIVHRFSKYATFVPTPK-MCSTEMTD

Q9UR07 Transposon Tf2-11 polyprotein2.6e-1827.27Show/hide
Query:  MLAVVHCLRAWRQYLLGS--KFVVKTDNSS-ICHFFNQSKLSSKQ-AQWQEYLVEFDFQFEHRPGRSTQAADALSR----------KSEHAALCMLAHLK
        MLA++  L+ WR YL  +   F + TD+ + I    N+S+  +K+ A+WQ +L +F+F+  +RPG +   ADALSR           SE  ++  +  + 
Subjt:  MLAVVHCLRAWRQYLLGS--KFVVKTDNSS-ICHFFNQSKLSSKQ-AQWQEYLVEFDFQFEHRPGRSTQAADALSR----------KSEHAALCMLAHLK

Query:  -ASKLRGSVYEAIKTHLK-------DDPTAQTIIQLAKAG-----------KTSGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYT
             +  V        K       +D   +  IQL K G                L + ++++ H+     H G +    ++ + + W  ++  + +Y 
Subjt:  -ASKLRGSVYEAIKTHLK-------DDPTAQTIIQLAKAG-----------KTSGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYT

Query:  KTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT
        + C   Q +K    K  G L+ +    RPWES+S+DFIT L +   +  + V+V RFSK A  VP  K  + E T
Subjt:  KTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVIVHRFSKYATFVPTPKMCSTEMT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGCAGTAGTCCACTGCCTGAGAGCCTGGAGACAATATCTCTTAGGTTCCAAGTTTGTTGTCAAGACCGACAACAGTTCGATATGTCATTTCTTCAATCAGTCAAA
GTTGTCCTCGAAGCAAGCCCAATGGCAAGAGTACCTCGTCGAATTCGACTTCCAATTCGAACATAGGCCTGGTCGATCAACCCAAGCAGCAGACGCCCTTAGTCGAAAGA
GCGAACATGCGGCCCTGTGCATGTTAGCTCATCTGAAAGCAAGCAAGTTGAGGGGGTCTGTCTATGAAGCTATCAAGACACATTTGAAAGACGATCCAACAGCACAGACA
ATCATTCAGCTAGCAAAGGCTGGGAAGACCTCAGGAAACCTGAAGAAACTCTTGATGGAAGAATGTCATGACACCATGTGGGCTGGCCATGCTGGGTGGCAGAGAACTTA
TGCCCTACTGAAGAAAGGGTACTACTGGCCGAACTTACAAGACGACGTTATGCAGTACACCAAGACGTGTCTCATCTTCCAACAAGACAAAGTTGAGAGAACTAAAATTG
CGGGCTTACTAGAGGCCCTTATAGTACCGTCAAGGCCTTGGGAGAGCGTATCCCTGGACTTCATTACCCACCTAACCAAGGTTGAAGAATTTGAAGATATCCTTGTTATT
GTCCACAGATTCTCAAAATATGCAACCTTTGTCCCAACTCCAAAGATGTGTTCCACAGAGATGACAGACGCATCTATTCTTAAAAAAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGCAGTAGTCCACTGCCTGAGAGCCTGGAGACAATATCTCTTAGGTTCCAAGTTTGTTGTCAAGACCGACAACAGTTCGATATGTCATTTCTTCAATCAGTCAAA
GTTGTCCTCGAAGCAAGCCCAATGGCAAGAGTACCTCGTCGAATTCGACTTCCAATTCGAACATAGGCCTGGTCGATCAACCCAAGCAGCAGACGCCCTTAGTCGAAAGA
GCGAACATGCGGCCCTGTGCATGTTAGCTCATCTGAAAGCAAGCAAGTTGAGGGGGTCTGTCTATGAAGCTATCAAGACACATTTGAAAGACGATCCAACAGCACAGACA
ATCATTCAGCTAGCAAAGGCTGGGAAGACCTCAGGAAACCTGAAGAAACTCTTGATGGAAGAATGTCATGACACCATGTGGGCTGGCCATGCTGGGTGGCAGAGAACTTA
TGCCCTACTGAAGAAAGGGTACTACTGGCCGAACTTACAAGACGACGTTATGCAGTACACCAAGACGTGTCTCATCTTCCAACAAGACAAAGTTGAGAGAACTAAAATTG
CGGGCTTACTAGAGGCCCTTATAGTACCGTCAAGGCCTTGGGAGAGCGTATCCCTGGACTTCATTACCCACCTAACCAAGGTTGAAGAATTTGAAGATATCCTTGTTATT
GTCCACAGATTCTCAAAATATGCAACCTTTGTCCCAACTCCAAAGATGTGTTCCACAGAGATGACAGACGCATCTATTCTTAAAAAAACATAG
Protein sequenceShow/hide protein sequence
MLAVVHCLRAWRQYLLGSKFVVKTDNSSICHFFNQSKLSSKQAQWQEYLVEFDFQFEHRPGRSTQAADALSRKSEHAALCMLAHLKASKLRGSVYEAIKTHLKDDPTAQT
IIQLAKAGKTSGNLKKLLMEECHDTMWAGHAGWQRTYALLKKGYYWPNLQDDVMQYTKTCLIFQQDKVERTKIAGLLEALIVPSRPWESVSLDFITHLTKVEEFEDILVI
VHRFSKYATFVPTPKMCSTEMTDASILKKT