; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g19930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g19930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr6:15632374..15633430
RNA-Seq ExpressionMoc06g19930
SyntenyMoc06g19930
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031826.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

A0A5A7TWB9 Gag/pol protein1.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

A0A5A7TZD7 Gag/pol protein1.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

A0A5A7UGV2 Gag/pol protein1.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

A0A5A7V4M1 Gag/pol protein1.8e-4853.22Show/hide
Query:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------
        MNEG+SVRE+VLN+MVHFNVAE NGAVIDE +Q+SFILESL +S LQF SNAVMNK+ YTLTTLLNELQT++SL+K                        
Subjt:  MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIK------------------------

Query:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH
                 NK +KKKK  G+G + N   A T KK KA    KG CF CN  GHWKR C KYLAEKK + +                        GATNH
Subjt:  --------NNKTFKKKKTTGKGPRPNPTTA-TVKKGKAKVVEKGKCFLCNMNGHWKRKCTKYLAEKKFSNE------------------------GATNH

Query:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA
        +CSSFQGISSWRQL+ GEMT++VGTG VVS +A
Subjt:  ICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAGGGTTCTTCAGTGCGAGAATATGTTCTTAACGTGATGGTCCACTTCAATGTGGCGGAGTCGAACGGGGCCGTCATAGACGAGCAGACTCAGATCAGCTTTAT
TCTGGAATCTCTTCTGAAGAGTTCCCTGCAATTTCTCAGCAATGCGGTTATGAATAAGCTGGAATACACTCTTACCACGCTCTTAAATGAGCTACAGACTTACCAATCTC
TTATTAAAAATAATAAGACTTTCAAGAAGAAGAAGACCACTGGTAAGGGGCCTAGACCTAACCCCACTACTGCCACTGTCAAGAAAGGCAAGGCCAAGGTTGTAGAGAAA
GGAAAGTGTTTTCTCTGCAACATGAACGGGCATTGGAAACGCAAATGCACGAAATACCTGGCCGAAAAGAAGTTTTCCAACGAAGGAGCCACTAATCACATTTGTTCTTC
GTTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCTGGAGAGATGACTCTCAAGGTCGGAACGGGAGAGGTCGTCTCAACTGTGGCGGATTGGAAGGCTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAGGGTTCTTCAGTGCGAGAATATGTTCTTAACGTGATGGTCCACTTCAATGTGGCGGAGTCGAACGGGGCCGTCATAGACGAGCAGACTCAGATCAGCTTTAT
TCTGGAATCTCTTCTGAAGAGTTCCCTGCAATTTCTCAGCAATGCGGTTATGAATAAGCTGGAATACACTCTTACCACGCTCTTAAATGAGCTACAGACTTACCAATCTC
TTATTAAAAATAATAAGACTTTCAAGAAGAAGAAGACCACTGGTAAGGGGCCTAGACCTAACCCCACTACTGCCACTGTCAAGAAAGGCAAGGCCAAGGTTGTAGAGAAA
GGAAAGTGTTTTCTCTGCAACATGAACGGGCATTGGAAACGCAAATGCACGAAATACCTGGCCGAAAAGAAGTTTTCCAACGAAGGAGCCACTAATCACATTTGTTCTTC
GTTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCTGGAGAGATGACTCTCAAGGTCGGAACGGGAGAGGTCGTCTCAACTGTGGCGGATTGGAAGGCTGGTTAA
Protein sequenceShow/hide protein sequence
MNEGSSVREYVLNVMVHFNVAESNGAVIDEQTQISFILESLLKSSLQFLSNAVMNKLEYTLTTLLNELQTYQSLIKNNKTFKKKKTTGKGPRPNPTTATVKKGKAKVVEK
GKCFLCNMNGHWKRKCTKYLAEKKFSNEGATNHICSSFQGISSWRQLDAGEMTLKVGTGEVVSTVADWKAG