; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g19980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g19980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:15645856..15650722
RNA-Seq ExpressionMoc06g19980
SyntenyMoc06g19980
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEY42825.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]1.1e-2039.38Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVV-KVLLEPEATQDALEYVQSLLNSFEIYTVEQVP
        G   G++LTSPEG+   Y LRF+F ASNN++E+EALI GLR+A  +G +N+ +   V+ K  A +V+   +++ E     L+ V+SL++SF I+++ QVP
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVV-KVLLEPEATQDALEYVQSLLNSFEIYTVEQVP

Query:  RSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
        RSKN  AD ++ +A      LS+ V+V+I+   S+ E +V  +   +   W TPI+++L+
Subjt:  RSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

XP_022146375.1 uncharacterized protein LOC111015604 [Momordica charantia]6.9e-2041.25Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-LEYVQSLLNSFEIYTVEQVP
        G   GILL +P G   EY LRF F+ SNN+ E+E L+ GLR+AK +GA +I++  F + + +   + +     +A  +  L  V+S L  FE Y V QV 
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-LEYVQSLLNSFEIYTVEQVP

Query:  RSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
        RS+NSN DTL  LA  YE DL+R V V+IM   S+ E +VM++D    + W  PI++ ++
Subjt:  RSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

XP_022151715.1 uncharacterized protein LOC111019628 [Momordica charantia]1.4e-2042.77Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDALEYVQSLLNSFEIYTVEQVPR
        G   GILL +P G   EY LRF FR SNN+ E+EAL+ GLR+AK +GA +I++    +   +  K      +P   +  L  V+S L  FE Y V QVPR
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDALEYVQSLLNSFEIYTVEQVPR

Query:  SKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
        S+NSNAD L  LA  YE DL+R V V+I+   S+ + +VM+ID +    W  PI++ ++
Subjt:  SKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

XP_022153142.1 uncharacterized protein LOC111020710 [Momordica charantia]3.6e-2142.07Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV
        G   GILL +PEG   EY LRF FR SNN+ E+EAL+ GLR+AK +GA +I++         +  +V  + E    +D      L  V+S L  F  Y V
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV

Query:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
         QVPRS+NSNAD L  LA  YE DL+R V V+I+   S+ E +VM++D    + W  PI++ ++
Subjt:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

XP_022155184.1 uncharacterized protein LOC111022318 [Momordica charantia]1.1e-2043.29Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV
        G   GILL +P G   EY LRF FR SNN+ E+EAL+ GLR+AK +G  +I++  F + +     VV  + E   T+D      L  V+S L  FE Y V
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV

Query:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
         QVPRS+N NAD L  LAL YE+DL+R V V+I+   S+ E +VM++D      W  PI++ ++
Subjt:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

TrEMBL top hitse value%identityAlignment
A0A6J1CX44 uncharacterized protein LOC1110156043.3e-2041.25Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-LEYVQSLLNSFEIYTVEQVP
        G   GILL +P G   EY LRF F+ SNN+ E+E L+ GLR+AK +GA +I++  F + + +   + +     +A  +  L  V+S L  FE Y V QV 
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-LEYVQSLLNSFEIYTVEQVP

Query:  RSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
        RS+NSN DTL  LA  YE DL+R V V+IM   S+ E +VM++D    + W  PI++ ++
Subjt:  RSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

A0A6J1DBZ0 uncharacterized protein LOC1110196286.7e-2142.77Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDALEYVQSLLNSFEIYTVEQVPR
        G   GILL +P G   EY LRF FR SNN+ E+EAL+ GLR+AK +GA +I++    +   +  K      +P   +  L  V+S L  FE Y V QVPR
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDALEYVQSLLNSFEIYTVEQVPR

Query:  SKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
        S+NSNAD L  LA  YE DL+R V V+I+   S+ + +VM+ID +    W  PI++ ++
Subjt:  SKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

A0A6J1DI47 Ribonuclease H1.8e-2142.07Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV
        G   GILL +PEG   EY LRF FR SNN+ E+EAL+ GLR+AK +GA +I++         +  +V  + E    +D      L  V+S L  F  Y V
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV

Query:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
         QVPRS+NSNAD L  LA  YE DL+R V V+I+   S+ E +VM++D    + W  PI++ ++
Subjt:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

A0A6J1DNM4 Ribonuclease H4.3e-2042.07Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV
        G  VGILL +P G   EY L+F FR SNN+ E+EAL+ GLR+AK +GA +I++  F + +     +V  + E   T+D      L  V+  L  F  Y V
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV

Query:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
         QVPRS+NSNAD L  LA  YE+DL+R V V+I+   S+ E +VM++D      W  PI++ ++
Subjt:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

A0A6J1DPI3 Ribonuclease H5.1e-2143.29Show/hide
Query:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV
        G   GILL +P G   EY LRF FR SNN+ E+EAL+ GLR+AK +G  +I++  F + +     VV  + E   T+D      L  V+S L  FE Y V
Subjt:  GLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDA-----LEYVQSLLNSFEIYTV

Query:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE
         QVPRS+N NAD L  LAL YE+DL+R V V+I+   S+ E +VM++D      W  PI++ ++
Subjt:  EQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMHVSSLTEVEVMDIDRLEMIDWRTPIIKHLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.4e-0425Show/hide
Query:  GGLRGHPGTLDPSHRRVHQRAGLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRI------------GEFVEGKPSAFKVV
        G  +G+PG           +AG   G +L + + S   Y       A+NN  E+ AL++GLR A   G +N+ +            G +    P   ++ 
Subjt:  GGLRGHPGTLDPSHRRVHQRAGLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRI------------GEFVEGKPSAFKVV

Query:  KVLLEPEATQDALEYVQSLLNSFEIYTVEQVPRSKNSNADTLTYLALF
        K               + L+NSF+ + ++ + R KNS AD     A+F
Subjt:  KVLLEPEATQDALEYVQSLLNSFEIYTVEQVPRSKNSNADTLTYLALF

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.4e-0425Show/hide
Query:  GGLRGHPGTLDPSHRRVHQRAGLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRI------------GEFVEGKPSAFKVV
        G  +G+PG           +AG   G +L + + S   Y       A+NN  E+ AL++GLR A   G +N+ +            G +    P   ++ 
Subjt:  GGLRGHPGTLDPSHRRVHQRAGLWVGILLTSPEGSCQEYTLRFKFRASNNDIEHEALIVGLRLAKSIGARNIRI------------GEFVEGKPSAFKVV

Query:  KVLLEPEATQDALEYVQSLLNSFEIYTVEQVPRSKNSNADTLTYLALF
        K               + L+NSF+ + ++ + R KNS AD     A+F
Subjt:  KVLLEPEATQDALEYVQSLLNSFEIYTVEQVPRSKNSNADTLTYLALF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAGTATTATAATGAACTAGGGTGTAACGCCCCGAGTCCCTCAGATCCTGTGTGGTGGGTCTTGTTTAGGAGGGGGGTAGATTTCTTATCTTTTGGGATTGGACT
TGTTGGGCCTCCTTTGAGCACATCCGGCCCACTCCGAACGGAGCGACGACACCCACGGCGATGGCGGCGCGACACAAATCGGCGTGAAGCGATCTTCGACGGCGACCCGG
CTCCGACAGCGTCGTCTTCGGTTCCGACGACATCCAGCAAGCGGCGCGACTCATTCTCCAGCGTCTCTGCGTGCAAGGCCGCGACGCTCCTCCGCGAACGGCAAGTCCGA
CGAGAGGCGCGCTGGTTTTGCAGCAGTTTCGGCGATACCCAGCAACGGCGGCGCCCCGGCGATCTGCAACGAACCAGAGCGGCCTCCTCCTCGCTGCGGCGCACGGCGTA
CAGGCGGTACAGCAGCGGAACGGAGGCGACTTGCTGCTACGATCCGACGAACAACAACTCCAGCGGCGGGATTTGTACGTTACAGCGGTGTTTAGAACGTTTGGCGTTAA
CCCACATCCGTTTGAAGCTCGATTTAGGCTACCCACACCTTGGCAAGCTAGATCTAGGTGACCCACATCCATACGAAGTCGGTTTTGGTGGTGTGAAGTCGGCGCAACAC
TTAAAGTATTGCTGTGGTAATGTTGGTTGCCTGGATAAGCATAAATGGTTCGGCGTGTGTTGTACTTCAGAAGACGGAGGCTTTCGGAAGGATCATGAAGTGGGCGATAG
AGCTGAGCGAGTAAGACATTCAGTATTCTCCCAAAGTGTCCATCAAAGGACAAGTTGTCGTGGACTTCGTTGCCAAGTTGACCCTCACTCCCTCTCGGGAGGCCTCAGGG
GTCACCCTGGGACATTGGATCCTTCACACCGACGGGTCCACCAACGAGCAGGACTATGGGTAGGAATCTTACTAACCAGTCCGGAAGGAAGTTGCCAAGAATACACCTTA
CGCTTCAAGTTCCGAGCTTCCAACAACGACATCGAGCATGAGGCATTGATTGTAGGACTCCGGTTAGCAAAGTCAATAGGGGCTCGCAACATTAGAATTGGAGAATTTGT
TGAGGGCAAGCCAAGTGCTTTCAAGGTTGTGAAAGTGTTGCTGGAGCCGGAAGCCACTCAGGATGCTTTAGAGTATGTGCAGTCACTCCTGAATTCCTTCGAGATATATA
CCGTCGAGCAGGTTCCACGATCCAAGAACTCTAATGCCGACACCCTGACCTACCTAGCATTGTTTTACGAGATGGATCTATCCAGAATAGTGATGGTCAAAATCATGCAC
GTCTCAAGCCTCACCGAGGTCGAGGTGATGGACATTGACCGCCTGGAGATGATTGACTGGAGAACTCCCATCATTAAGCACCTGGAGTTTTCCCTTCAAGATCTTCTTGA
TAAATTTTTTACGACCTTGACCTGTCCGCTGGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACAAGTATTATAATGAACTAGGGTGTAACGCCCCGAGTCCCTCAGATCCTGTGTGGTGGGTCTTGTTTAGGAGGGGGGTAGATTTCTTATCTTTTGGGATTGGACT
TGTTGGGCCTCCTTTGAGCACATCCGGCCCACTCCGAACGGAGCGACGACACCCACGGCGATGGCGGCGCGACACAAATCGGCGTGAAGCGATCTTCGACGGCGACCCGG
CTCCGACAGCGTCGTCTTCGGTTCCGACGACATCCAGCAAGCGGCGCGACTCATTCTCCAGCGTCTCTGCGTGCAAGGCCGCGACGCTCCTCCGCGAACGGCAAGTCCGA
CGAGAGGCGCGCTGGTTTTGCAGCAGTTTCGGCGATACCCAGCAACGGCGGCGCCCCGGCGATCTGCAACGAACCAGAGCGGCCTCCTCCTCGCTGCGGCGCACGGCGTA
CAGGCGGTACAGCAGCGGAACGGAGGCGACTTGCTGCTACGATCCGACGAACAACAACTCCAGCGGCGGGATTTGTACGTTACAGCGGTGTTTAGAACGTTTGGCGTTAA
CCCACATCCGTTTGAAGCTCGATTTAGGCTACCCACACCTTGGCAAGCTAGATCTAGGTGACCCACATCCATACGAAGTCGGTTTTGGTGGTGTGAAGTCGGCGCAACAC
TTAAAGTATTGCTGTGGTAATGTTGGTTGCCTGGATAAGCATAAATGGTTCGGCGTGTGTTGTACTTCAGAAGACGGAGGCTTTCGGAAGGATCATGAAGTGGGCGATAG
AGCTGAGCGAGTAAGACATTCAGTATTCTCCCAAAGTGTCCATCAAAGGACAAGTTGTCGTGGACTTCGTTGCCAAGTTGACCCTCACTCCCTCTCGGGAGGCCTCAGGG
GTCACCCTGGGACATTGGATCCTTCACACCGACGGGTCCACCAACGAGCAGGACTATGGGTAGGAATCTTACTAACCAGTCCGGAAGGAAGTTGCCAAGAATACACCTTA
CGCTTCAAGTTCCGAGCTTCCAACAACGACATCGAGCATGAGGCATTGATTGTAGGACTCCGGTTAGCAAAGTCAATAGGGGCTCGCAACATTAGAATTGGAGAATTTGT
TGAGGGCAAGCCAAGTGCTTTCAAGGTTGTGAAAGTGTTGCTGGAGCCGGAAGCCACTCAGGATGCTTTAGAGTATGTGCAGTCACTCCTGAATTCCTTCGAGATATATA
CCGTCGAGCAGGTTCCACGATCCAAGAACTCTAATGCCGACACCCTGACCTACCTAGCATTGTTTTACGAGATGGATCTATCCAGAATAGTGATGGTCAAAATCATGCAC
GTCTCAAGCCTCACCGAGGTCGAGGTGATGGACATTGACCGCCTGGAGATGATTGACTGGAGAACTCCCATCATTAAGCACCTGGAGTTTTCCCTTCAAGATCTTCTTGA
TAAATTTTTTACGACCTTGACCTGTCCGCTGGTCTAA
Protein sequenceShow/hide protein sequence
MYKYYNELGCNAPSPSDPVWWVLFRRGVDFLSFGIGLVGPPLSTSGPLRTERRHPRRWRRDTNRREAIFDGDPAPTASSSVPTTSSKRRDSFSSVSACKAATLLRERQVR
REARWFCSSFGDTQQRRRPGDLQRTRAASSSLRRTAYRRYSSGTEATCCYDPTNNNSSGGICTLQRCLERLALTHIRLKLDLGYPHLGKLDLGDPHPYEVGFGGVKSAQH
LKYCCGNVGCLDKHKWFGVCCTSEDGGFRKDHEVGDRAERVRHSVFSQSVHQRTSCRGLRCQVDPHSLSGGLRGHPGTLDPSHRRVHQRAGLWVGILLTSPEGSCQEYTL
RFKFRASNNDIEHEALIVGLRLAKSIGARNIRIGEFVEGKPSAFKVVKVLLEPEATQDALEYVQSLLNSFEIYTVEQVPRSKNSNADTLTYLALFYEMDLSRIVMVKIMH
VSSLTEVEVMDIDRLEMIDWRTPIIKHLEFSLQDLLDKFFTTLTCPLV