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Moc06g20340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g20340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationchr6:15916789..15917475
RNA-Seq ExpressionMoc06g20340
SyntenyMoc06g20340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]7.3e-1830.25Show/hide
Query:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------
        + G+ W +SA+ A T + + L P A VW+H LKS+L+PTTH  +++K+ +LLL  +L G +I+VG++I  EI     RK G L+F  LI  LC       
Subjt:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------

Query:  ILSGVKMEDTDQ---------------------------TAS-------LLQQLSS--------------TVGVVAAIKQRQQTYMSYAKERDIVIRKAL
        +++  K+ +T +                           TAS       +LQQL +               + ++    ++QQ + +Y+KERD  ++KAL
Subjt:  ILSGVKMEDTDQ---------------------------TAS-------LLQQLSS--------------TVGVVAAIKQRQQTYMSYAKERDIVIRKAL

Query:  MRNFSCPFSPFPKFPED-----KFAIEEEEDAGASQPA
          NF+ P   FP FP++      +  E E D   S  A
Subjt:  MRNFSCPFSPFPKFPED-----KFAIEEEEDAGASQPA

PON59596.1 hypothetical protein PanWU01x14_158080 [Parasponia andersonii]7.5e-1531.19Show/hide
Query:  LKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------ILSGVKMEDTDQ--------
        L P A VW+H LKS+L+PTTH  +++K+ +LLL  +L G +I+VG++I  EI     RK G L+F  LI +LC       +++  K+  T +        
Subjt:  LKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------ILSGVKMEDTDQ--------

Query:  -----TASLLQQLSSTVGVVA--------------AIKQR---------------------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPKFPED---
                L QQ S++   VA              A++QR                     QQ + +Y+KERD  ++KAL  NF+ P   FP FP++   
Subjt:  -----TASLLQQLSSTVGVVA--------------AIKQR---------------------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPKFPED---

Query:  --KFAIEEEEDAGASQPA
           +  E E D   S  A
Subjt:  --KFAIEEEEDAGASQPA

PON62892.1 hypothetical protein PanWU01x14_135680 [Parasponia andersonii]2.2e-1447.25Show/hide
Query:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC
        G+ W +S++ A T L + L P A VW+H LKS+L+PTTH  +++KE VLLL  +L G +I+VGQ+I  EI     RK G L+F  LI  +C
Subjt:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC

PON71279.1 hypothetical protein PanWU01x14_074190, partial [Parasponia andersonii]1.4e-1347.25Show/hide
Query:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC
        G+ W +S++ A   L + L P ANVW+H LKS+L+PTTH  +++KE VLLL  +L G +I+VGQ+I+ EI     RK G L+FS  I  +C
Subjt:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]1.1e-1832Show/hide
Query:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-----IL
        + G+ W +SA+ A T + + L P A VW+H LKS+L+PTTH   ++K+ +LLL  +L G +I+VG++I  EI     +K G L+F  LI  LC     ++
Subjt:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-----IL

Query:  SGVKMEDTDQTASL-------------LQQLSSTVGVVA--------------AIKQR----------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPK
        +  K+ +T +  ++              QQ SS+    A              A++QR          QQ + +Y+KERD  ++KAL  NF+ P   FP 
Subjt:  SGVKMEDTDQTASL-------------LQQLSSTVGVVA--------------AIKQR----------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPK

Query:  FPED-----KFAIEEEEDAGASQPA
        FP++      +  E E D   S  A
Subjt:  FPED-----KFAIEEEEDAGASQPA

TrEMBL top hitse value%identityAlignment
A0A2P5BCG4 Uncharacterized protein (Fragment)3.5e-1830.25Show/hide
Query:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------
        + G+ W +SA+ A T + + L P A VW+H LKS+L+PTTH  +++K+ +LLL  +L G +I+VG++I  EI     RK G L+F  LI  LC       
Subjt:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------

Query:  ILSGVKMEDTDQ---------------------------TAS-------LLQQLSS--------------TVGVVAAIKQRQQTYMSYAKERDIVIRKAL
        +++  K+ +T +                           TAS       +LQQL +               + ++    ++QQ + +Y+KERD  ++KAL
Subjt:  ILSGVKMEDTDQ---------------------------TAS-------LLQQLSS--------------TVGVVAAIKQRQQTYMSYAKERDIVIRKAL

Query:  MRNFSCPFSPFPKFPED-----KFAIEEEEDAGASQPA
          NF+ P   FP FP++      +  E E D   S  A
Subjt:  MRNFSCPFSPFPKFPED-----KFAIEEEEDAGASQPA

A0A2P5CEY2 Uncharacterized protein3.6e-1531.19Show/hide
Query:  LKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------ILSGVKMEDTDQ--------
        L P A VW+H LKS+L+PTTH  +++K+ +LLL  +L G +I+VG++I  EI     RK G L+F  LI +LC       +++  K+  T +        
Subjt:  LKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-------ILSGVKMEDTDQ--------

Query:  -----TASLLQQLSSTVGVVA--------------AIKQR---------------------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPKFPED---
                L QQ S++   VA              A++QR                     QQ + +Y+KERD  ++KAL  NF+ P   FP FP++   
Subjt:  -----TASLLQQLSSTVGVVA--------------AIKQR---------------------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPKFPED---

Query:  --KFAIEEEEDAGASQPA
           +  E E D   S  A
Subjt:  --KFAIEEEEDAGASQPA

A0A2P5CPE8 Uncharacterized protein1.1e-1447.25Show/hide
Query:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC
        G+ W +S++ A T L + L P A VW+H LKS+L+PTTH  +++KE VLLL  +L G +I+VGQ+I  EI     RK G L+F  LI  +C
Subjt:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC

A0A2P5DDA9 Uncharacterized protein (Fragment)6.9e-1447.25Show/hide
Query:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC
        G+ W +S++ A   L + L P ANVW+H LKS+L+PTTH  +++KE VLLL  +L G +I+VGQ+I+ EI     RK G L+FS  I  +C
Subjt:  GSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC

A0A2P5DXM3 Uncharacterized protein5.4e-1932Show/hide
Query:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-----IL
        + G+ W +SA+ A T + + L P A VW+H LKS+L+PTTH   ++K+ +LLL  +L G +I+VG++I  EI     +K G L+F  LI  LC     ++
Subjt:  SGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELC-----IL

Query:  SGVKMEDTDQTASL-------------LQQLSSTVGVVA--------------AIKQR----------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPK
        +  K+ +T +  ++              QQ SS+    A              A++QR          QQ + +Y+KERD  ++KAL  NF+ P   FP 
Subjt:  SGVKMEDTDQTASL-------------LQQLSSTVGVVA--------------AIKQR----------QQTYMSYAKERDIVIRKALMRNFSCPFSPFPK

Query:  FPED-----KFAIEEEEDAGASQPA
        FP++      +  E E D   S  A
Subjt:  FPED-----KFAIEEEEDAGASQPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGGAGTGGAGGCTCAAGGTGGCAGCTATCAGCTAGAAGAGCACGCACATTCCTTCCAGCCTACCTTAAGCCAGAAGCCAATGTCTGGCATCATTTGCTG
AAGAGTAAGCTCATGCCCACAACGCATGACACCTCCATCACAAAGGAGATGGTGCTCCTCCTGCTTTGCATTCTAGAAGGGCTTAACATCGATGTGGGCCAGCTT
ATTGAGATGGAAATTGCAGGGGTTGAGAAGAGAAAGCAGGGCAACCTATATTTCTCGGATCTGATCATGGAGCTTTGCATCCTATCGGGGGTCAAGATGGAAGAC
ACAGACCAAACGGCTAGCCTACTGCAGCAGCTCAGCTCCACTGTAGGAGTTGTGGCAGCCATAAAGCAAAGGCAGCAAACCTATATGAGTTATGCCAAGGAAAGA
GACATCGTGATTCGCAAAGCCCTCATGCGCAATTTCTCTTGCCCATTTTCGCCTTTCCCAAAATTCCCAGAGGACAAGTTTGCTATTGAAGAAGAAGAGGATGCT
GGAGCATCTCAGCCCGCGGGCGGCTCTAGTGAAAAAGAAGAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTGGAGTGGAGGCTCAAGGTGGCAGCTATCAGCTAGAAGAGCACGCACATTCCTTCCAGCCTACCTTAAGCCAGAAGCCAATGTCTGGCATCATTTGCTG
AAGAGTAAGCTCATGCCCACAACGCATGACACCTCCATCACAAAGGAGATGGTGCTCCTCCTGCTTTGCATTCTAGAAGGGCTTAACATCGATGTGGGCCAGCTT
ATTGAGATGGAAATTGCAGGGGTTGAGAAGAGAAAGCAGGGCAACCTATATTTCTCGGATCTGATCATGGAGCTTTGCATCCTATCGGGGGTCAAGATGGAAGAC
ACAGACCAAACGGCTAGCCTACTGCAGCAGCTCAGCTCCACTGTAGGAGTTGTGGCAGCCATAAAGCAAAGGCAGCAAACCTATATGAGTTATGCCAAGGAAAGA
GACATCGTGATTCGCAAAGCCCTCATGCGCAATTTCTCTTGCCCATTTTCGCCTTTCCCAAAATTCCCAGAGGACAAGTTTGCTATTGAAGAAGAAGAGGATGCT
GGAGCATCTCAGCCCGCGGGCGGCTCTAGTGAAAAAGAAGAAGATTAA
Protein sequenceShow/hide protein sequence
MHWSGGSRWQLSARRARTFLPAYLKPEANVWHHLLKSKLMPTTHDTSITKEMVLLLLCILEGLNIDVGQLIEMEIAGVEKRKQGNLYFSDLIMELCILSGVKMED
TDQTASLLQQLSSTVGVVAAIKQRQQTYMSYAKERDIVIRKALMRNFSCPFSPFPKFPEDKFAIEEEEDAGASQPAGGSSEKEED