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Moc06g20440 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g20440
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:15968095..15969853
RNA-Seq ExpressionMoc06g20440
SyntenyMoc06g20440
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-2258.56Show/hide
Query:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ
        +E   E++P+ ++MSVM+ D  ++E+RMAE+E+K+  LMK VEEKD+EIA LKN IE++D AESS T  +K  +KGK I QE+Q Q STSIASLSVQQLQ
Subjt:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ

Query:  DMITNMIRAQY
        +MI N I+ QY
Subjt:  DMITNMIRAQY

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]4.3e-2361.95Show/hide
Query:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ
        +A ++  K    DVMSVMMAD  + E  MAEMERK+  LMK V+E+D+EIA+LK Q++ ++ AESSQTP +K++DKGK + QENQ  Q STS+ASLSVQQ
Subjt:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ

Query:  LQDMITNMIRAQY
        LQDMITN IRAQY
Subjt:  LQDMITNMIRAQY

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.6e-2261.06Show/hide
Query:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ
        +A ++  K    DVMSVMMAD  + E  MAEMERK+  LMK V+E+D+EIA+LK Q++ ++ AESSQTP +K++DKGK + QENQ  Q STS+ASLSVQQ
Subjt:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ

Query:  LQDMITNMIRAQY
        LQDMIT+ IRAQY
Subjt:  LQDMITNMIRAQY

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.6e-2261.06Show/hide
Query:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ
        +A ++  K    DVMSVMMAD  + E  MAEMERK+  LMK V+E+D+EIA+LK Q++ ++ AESSQTP +K++DKGK + QENQ  Q STS+ASLSVQQ
Subjt:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ

Query:  LQDMITNMIRAQY
        LQDMIT+ IRAQY
Subjt:  LQDMITNMIRAQY

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]4.3e-2361.95Show/hide
Query:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ
        +A ++  K    DVMSVMMAD  + E  MAEMERK+  LMK V+E+D+EIA+LK Q++ ++ AESSQTP +K++DKGK + QENQ  Q STS+ASLSVQQ
Subjt:  AAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQ-SQYSTSIASLSVQQ

Query:  LQDMITNMIRAQY
        LQDMITN IRAQY
Subjt:  LQDMITNMIRAQY

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein1.0e-2257.66Show/hide
Query:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ
        +E   E++P+ ++MSVM+ D  ++E+RMAE+E+K+  LMK VEE+D+EIA LKN IE++D AESS T  +K  +KGK I QE+Q Q STSIASLSVQQLQ
Subjt:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ

Query:  DMITNMIRAQY
        +MI N I+ QY
Subjt:  DMITNMIRAQY

A0A5A7TZU9 Ribonuclease H1.4e-2257.66Show/hide
Query:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ
        +E   E++P+ ++MSVM+ D  ++E+RMAE+E+K+  LMK VEE+D+EIA LKN IE++D AESS T  +K  +KGK I QE+Q Q STSIASLSVQQLQ
Subjt:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ

Query:  DMITNMIRAQY
        +MI N I+ QY
Subjt:  DMITNMIRAQY

A0A5A7U5H1 Ty3-gypsy retrotransposon protein6.1e-2358.56Show/hide
Query:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ
        +E   E++P+ ++MSVM+ D  ++E+RMAE+E+K+  LMK VEEKD+EIA LKN IE++D AESS T  +K  +KGK I QE+Q Q STSIASLSVQQLQ
Subjt:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ

Query:  DMITNMIRAQY
        +MI N I+ QY
Subjt:  DMITNMIRAQY

A0A5A7UUI7 Ty3-gypsy retrotransposon protein1.2e-2155.86Show/hide
Query:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ
        +E   E++P+ ++MSVM+ +  ++E RMAE+E+K+  LMK VEE+DYEIA LKN IE++D AESS    +K  DKGK + QE+Q Q STSIASLSVQQLQ
Subjt:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ

Query:  DMITNMIRAQY
        +MI + I+ QY
Subjt:  DMITNMIRAQY

A0A5D3D4X3 Ty3-gypsy retrotransposon protein8.8e-2256.76Show/hide
Query:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ
        +E   E+ P+ ++MSVM+ D   +E+RMAE+E+K+  LMK VEE+DYEIA LKN IE++D AESS    +K  DKGK + QE+Q Q STSIASLSVQQLQ
Subjt:  AEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKINDKGKTIAQENQSQYSTSIASLSVQQLQ

Query:  DMITNMIRAQY
        +MI + I+ QY
Subjt:  DMITNMIRAQY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACACACTATGTTGGAAAAATGCACCAGACGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCATTACCGCTTTTGGTTGCTGCAGAGGCT
AAGTTCGAGAAAATTCCAGAAATCGATGTGATGTCTGTTATGATGGCTGATGCAAGCAGCACGGAAGAAAGGATGGCTGAAATGGAAAGGAAACTTGCTGCGCTG
ATGAAGACGGTGGAAGAAAAGGACTATGAAATCGCTTCCCTGAAGAATCAGATTGAAAATAAAGATGTTGCTGAGTCGAGTCAAACCCCTGCTCTCAAGATAAAT
GACAAGGGAAAGACTATCGCTCAAGAAAATCAATCGCAGTATTCCACTTCGATCGCTTCGCTATCTGTTCAGCAGCTCCAAGATATGATCACAAACATGATCAGA
GCGCAATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACACACTATGTTGGAAAAATGCACCAGACGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCATTACCGCTTTTGGTTGCTGCAGAGGCT
AAGTTCGAGAAAATTCCAGAAATCGATGTGATGTCTGTTATGATGGCTGATGCAAGCAGCACGGAAGAAAGGATGGCTGAAATGGAAAGGAAACTTGCTGCGCTG
ATGAAGACGGTGGAAGAAAAGGACTATGAAATCGCTTCCCTGAAGAATCAGATTGAAAATAAAGATGTTGCTGAGTCGAGTCAAACCCCTGCTCTCAAGATAAAT
GACAAGGGAAAGACTATCGCTCAAGAAAATCAATCGCAGTATTCCACTTCGATCGCTTCGCTATCTGTTCAGCAGCTCCAAGATATGATCACAAACATGATCAGA
GCGCAATACTAA
Protein sequenceShow/hide protein sequence
MENTLCWKNAPDAIPDFSWDLSSTLSLPLLVAAEAKFEKIPEIDVMSVMMADASSTEERMAEMERKLAALMKTVEEKDYEIASLKNQIENKDVAESSQTPALKIN
DKGKTIAQENQSQYSTSIASLSVQQLQDMITNMIRAQY